Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00915 ATGGCGAATCGATGGTGGGCTGAAAACATACCCACCACCACAGATAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCTGCTGATGAAGAGAACAACTCCGGTAGCCATGAAAGAGCCGAACCAGGCACCAGTTCAAGCACGCGCCGCCCTCGTGGCCGGCCGCCGGGATCTAAGAACAAGCCGAAACCACCGGTGGTGGTCACTAAGGAGAGCCCCGATGCCCTTCGGAGCCACGTTTTGGAAATTGGTAGCGGCAGCGACATCGTCGAAAGCATCTCGAACTTTGCCCAGCGCCGGCAGCGAGGAGTTTCGGTTCTCAGTGGAAATGGGGTTGTTGCCAACGTTACTCTCCGGCATCCGGGTGCCTCTGGCGGTGTTATTACGCTACAGGGTCGATTTGATATATTGTCGCTCTCGGGTGCTTTTTTGCCTGCCCCAGCTCCACCGGGTGCTACTGGATTAACTGTCTACTTGGCTGGCGGGCAGGGGCAGGTGGTTGGCGGCATTGTCGTTGGTGCACTCGTGGCAACCGGTCCAGTTATTGTAATAGCTGCCACTTTCACCAATGCGACATTTGAGCGGCTGCCGCTCGAGGACGAGGAGGTTGCCGCAGGAGATAAGTCTGGAACTAGCCAGAACAATTCAACATCTCAGAGCATGGGGGAGCAACAGCAACAGCCGCCATCAATGGGAGTTTACAATATGGCTCCAAATTTGGTGGCAAATGGTCAGGTTTCTTCACATGATATGATTTGGAGTCTTCCTAGAGCCCCACCTCCGTTTTAA 804 54.35 MANRWWAENIPTTTDSSTSNPYSTPLKQSLEAADEENNSGSHERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPGASGGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEDEEVAAGDKSGTSQNNSTSQSMGEQQQQPPSMGVYNMAPNLVANGQVSSHDMIWSLPRAPPPF 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6686355 6687224 - MELO3C023881.2.1 Cme10g00915 339801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00915 267 MobiDBLite consensus disorder prediction 1 35 - -
Cme10g00915 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Cme10g00915 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Cme10g00915 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 261 - -
Cme10g00915 267 MobiDBLite consensus disorder prediction 207 241 - -
Cme10g00915 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 261 IPR014476 GO:0003680
Cme10g00915 267 MobiDBLite consensus disorder prediction 1 78 - -
Cme10g00915 267 Gene3D - 81 210 - -
Cme10g00915 267 ProSiteProfiles PPC domain profile profile. 78 216 IPR005175 -
Cme10g00915 267 MobiDBLite consensus disorder prediction 212 238 - -
Cme10g00915 267 MobiDBLite consensus disorder prediction 43 58 - -
Cme10g00915 267 PIRSF ESCAROLA 7 265 IPR014476 GO:0003680
Cme10g00915 267 CDD DUF296 82 165 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g00178 Cme10g00915 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00745 Cme-Chr2:9389020 Cme10g00915 Cme-Chr10:6686355 8.07E-34 dispersed
Cme02g01693 Cme-Chr2:24024980 Cme10g00915 Cme-Chr10:6686355 3.13E-67 dispersed
Cme03g00178 Cme-Chr3:2169055 Cme10g00915 Cme-Chr10:6686355 2.06E-65 dispersed
Cme04g00240 Cme-Chr4:1892465 Cme10g00915 Cme-Chr10:6686355 9.92E-38 dispersed
Cme05g01816 Cme-Chr5:27058920 Cme10g00915 Cme-Chr10:6686355 4.81E-80 dispersed
Cme06g00250 Cme-Chr6:1512743 Cme10g00915 Cme-Chr10:6686355 6.40E-62 dispersed
Cme10g00915 Cme-Chr10:6686355 Cme11g02481 Cme-Chr11:31446850 3.59E-67 dispersed
Cme10g00915 Cme-Chr10:6686355 Cme06g00517 Cme-Chr6:3249890 5.38E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00915 - - csv:101217530 423.32