Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01050 ATGATTTTTGCTCTCGTTTACTGTACTGCTGGAATCTCCGGTGGCCACATTAACCCAGCGGTCACTTTTGGGTTGTTCCTGGCAAGAAAATTGTCGTTGACTAGGGCGATTTTCTACATGGTCATGCAATGCCTTGGTGCTATCTGCGGCGCGGGAGTGGTGAAGGGGTTCCAACCCAAGCCCTACGAAAGGCTCGGGGGTGGAGCTAACGTTGTGAGCGACGGTTACTCCAAAGGGGATGGCCTTGGCGCTGAGATCGTGGGTACTTTCATTCTTGTTTACACCGTCTTCTCCGCCACTGATGCTAAACGTAGCGCCAGAGACTCACACGTTCCGATATTGGCGCCGCTACCAATTGGGTTTGCAGTGTTCTTAGTCCACTTGGCGACAATTCCGATCACCGGCACCGGCATCAACCCAGCTCGGAGTTTGGGAGCAGCCATCATCTTCAACAAGGACAAAGCGTGGGATGATCATTGGATATTCTGGGTTGGACCATTCATCGGAGCAGCATTGGCAGCTTTATACCATCAAGTTGTGATTAGAGCCATTCCTTTCAAGTCCAAGTGA 570 51.4 MIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQCLGAICGAGVVKGFQPKPYERLGGGANVVSDGYSKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDKAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8903991 8904989 - MELO3C000776.2.1 Cme10g01050 339936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01050 189 Gene3D Glycerol uptake facilitator protein. 1 188 IPR023271 -
Cme10g01050 189 CDD MIP 1 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01050 189 ProSitePatterns MIP family signature. 16 24 IPR022357 -
Cme10g01050 189 TIGRFAM MIP: MIP family channel proteins 2 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01050 189 SUPERFAMILY Aquaporin-like 2 181 IPR023271 -
Cme10g01050 189 PANTHER AQUAPORIN PIP1-2-RELATED 1 189 - -
Cme10g01050 189 Pfam Major intrinsic protein 1 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01050 189 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01050 189 PRINTS Major intrinsic protein family signature 120 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01050 189 PRINTS Major intrinsic protein family signature 160 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01050 189 PRINTS Major intrinsic protein family signature 84 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01050 189 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 189 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g01050 Cme-Chr10:8903991 Cme10g01052 Cme-Chr10:8922839 1.88E-136 dispersed
Cme10g01049 Cme-Chr10:8898455 Cme10g01050 Cme-Chr10:8903991 5.16E-130 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01050 K09872 - csv:101214754 381.333