Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01052 ATGGAGGGAAAGGACGAGGATGTCCGATTGGGAGCCAATAAGTTCACCGAGAGGCAGCCCATTGGGACGGCGGCGCAGAGCCAAGACGATGCCAAGGACTACAAAGAGCCACCACCGGCTCCTCTCTTCGAGCCAGAGGAGCTCACTTCATGGTCTTTTTACAGAGCAGGAATCGCCGAGTTTTTCGCTACTTTTCTCTTTCTTTACATCACCGTTTTGACTGTCATGGGTGTCGTCCGGTCCAAGGAAGCGGATGGTAATACCTGTAAGACAGTCGGGATTCAGGGGATCGCTTGGGCTTTCGGTGGTATGATTTTTGCTCTCGTTTACTGTACTGCTGGAATCTCCGGTGGCCACATTAACCCAGCGGTCACTTTTGGGTTGTTCCTGGCAAGGAAATTGTCGTTGACTAGGGCGATTTTCTACATGGTCATGCAATGCCTTGGTGCTATCTGCGGCGCGGGAGTGGTGAAGGGGTTCCAACCCAAGCCCTACGAAAGGCTCGGGGGTGGAGCTAACGTTGTGAGCGACGGTTACTCCAAAGGGGATGGCCTTGGCGCTGAGATCGTGGGTACTTTCATTCTTGTTTACACCGTCTTCTCCGCCACTGATGCTAAACGTAGCGCCAGAGACTCACACGTTCCGATATTGGCGCCGCTACCAATTGGGTTTGCAGTGTTCTTAGTCCACTTGGCGACAATTCCGATCACCGGCACCGGCATCAACCCAGCTCGGAGTTTGGGAGCAGCCATCATCTTCAACAAGGACAAAGCGTGGGATGATCATTGGATATTCTGGGTTGGACCATTCATCGGAGCAGCATTGGCAGCTTTATACCATCAAGTTGTGATTAGAGCCATTCCCTTCAAGTCCAAGTGA 879 52.45 MEGKDEDVRLGANKFTERQPIGTAAQSQDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSKEADGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQCLGAICGAGVVKGFQPKPYERLGGGANVVSDGYSKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDKAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8922839 8924095 - MELO3C025166.2.1 Cme10g01052 339938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01052 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 292 IPR034294 -
Cme10g01052 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01052 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Cme10g01052 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Cme10g01052 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01052 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01052 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01052 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01052 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01052 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01052 292 PANTHER AQUAPORIN PIP1-4-RELATED 1 292 - -
Cme10g01052 292 SUPERFAMILY Aquaporin-like 46 285 IPR023271 -
Cme10g01052 292 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g01052 292 MobiDBLite consensus disorder prediction 1 39 - -
Cme10g01052 292 CDD MIP 55 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g01049 Cme-Chr10:8898455 Cme10g01052 Cme-Chr10:8922839 0 dispersed
Cme10g01050 Cme-Chr10:8903991 Cme10g01052 Cme-Chr10:8922839 1.88E-136 dispersed
Cme10g01052 Cme-Chr10:8922839 Cme11g01798 Cme-Chr11:26126094 6.74E-149 dispersed
Cme10g01051 Cme-Chr10:8905000 Cme10g01052 Cme-Chr10:8922839 3.09E-58 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01052 K09872 - csv:101215145 576.63