Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01057 ATGGGTTCCGTCTATCGTGATCGGACGTCGGAATTTCGTTCACTATTGGAGACGCTGAAGAAGATGGGCGGAGCCACATCCGCCATCAATCAAACTCAAAATGAACCATCGGCGTCTATACCCTCCGGATCACCGGCCTTTGCACGATCAGAATTCAGCAAAAAGGCCTCCCGTATCGGATTAGGAATCCAAGATACCTCTCAGAAGATCGTGAGGCTCGCTCAGTTGGCGAAAAGATCATCAATGTTTGATGACCCAATCAGGGAAATACAGGAAATGACTGCTTTGATTAAGAATGATATTACATCCTTAAATGTAGCTATCACAGACTTGCAAACCATCCATAACATGGAGACAACAGAGGGGACTTATTCAGAGGATAGAGTGGTTCATTCAACAGCTGTCTGTGATGACCTGAAGAGCAGACTTATGGGTGCTACAAAACAGCTACAAGATGTGCTAACCACGAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGGCAAATATTTTCTGCAAATGCATCTAGGGAAAGTCCTTTTCAAAATCAAGCCAAAGCTGTAACTCAACCTCCACCTTGGTCAATCAATACATCTGGAAGTGCTCAATCATCACTGTTGTCATCAAATGGAGCTCAAGTTGGGGGTCAATTGAGACGAAGGTTAGCTGTGGAGAACATGAACACCCCATCACAGCAAATGGAGATGTCGATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCACAAAGTCGTGCAATTGCTCTCCATAATGTGGAATCCACCATATCAGAACTCAGTGGAATTTTTTCACATCTTGCCACGATGGTTGCTCATCAAGGAGAACTTGCTATCAGGATTGATGACAATATGGACGAATCATTGGCAAATGTAGATGGCGCTCGGAGTGCTCTTTTAAGGCATCTTAGCCAGATATCATCAAATAGATGGCTTCTCATAAAAATATTTGCCATTTTAATTATTTTCTTGATGGTCTTTATTTTCTTGGCATAA 1017 43.07 MGSVYRDRTSEFRSLLETLKKMGGATSAINQTQNEPSASIPSGSPAFARSEFSKKASRIGLGIQDTSQKIVRLAQLAKRSSMFDDPIREIQEMTALIKNDITSLNVAITDLQTIHNMETTEGTYSEDRVVHSTAVCDDLKSRLMGATKQLQDVLTTRTENIKANESRRQIFSANASRESPFQNQAKAVTQPPPWSINTSGSAQSSLLSSNGAQVGGQLRRRLAVENMNTPSQQMEMSMLQQVVPRQENYSQSRAIALHNVESTISELSGIFSHLATMVAHQGELAIRIDDNMDESLANVDGARSALLRHLSQISSNRWLLIKIFAILIIFLMVFIFLA 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9048851 9051856 + MELO3C025172.2.1 Cme10g01057 339943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01057 338 CDD SNARE_syntaxin5 250 335 - -
Cme10g01057 338 PANTHER SYNTAXIN 4 337 IPR045242 -
Cme10g01057 338 Pfam SNARE domain 284 335 IPR000727 -
Cme10g01057 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Cme10g01057 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Cme10g01057 338 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cme10g01057 338 Gene3D - 48 302 - -
Cme10g01057 338 MobiDBLite consensus disorder prediction 173 210 - -
Cme10g01057 338 SUPERFAMILY t-snare proteins 49 302 IPR010989 GO:0016020|GO:0016192
Cme10g01057 338 SMART tSNARE_6 242 309 IPR000727 -
Cme10g01057 338 PANTHER SYNTAXIN-31 4 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01671 Cme-Chr3:25449299 Cme10g01057 Cme-Chr10:9048851 1.47E-108 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01057 K08490 - csv:101213786 589.726