Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01083 ATGGCGTCAATATCTTCAAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGTCGCACGGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCGGCTGAGGAAGTTCCATCCGAGCTCCCTGAACCTGCGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGTAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTACTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGCAATGAGCGGAAGCGACTATTTAGTATGATCAATGATCTACCCACTCTATTTGAAGTTGCATCCGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCTAGAAACAGCACAAAGAGGTCACTAGATGGGTCGACTAGAAACAGCAATCCAAAACTACTTGAAGAGAGTTATGGAGAGGACGAAGATGAGCATGGTGACACACTCTGTGGAAGCTGTGGTGGGAACTACAACGCGGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTACCACGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAGTACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACTGTAG 726 47.66 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSTRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWYHGKCVRITPAKAENIKQYKCPSCSTKRGRL 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9532808 9543924 + MELO3C025197.2.1 Cme10g01083 339969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01083 241 MobiDBLite consensus disorder prediction 141 182 - -
Cme10g01083 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Cme10g01083 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Cme10g01083 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Cme10g01083 241 Pfam PHD-finger 188 236 IPR019787 -
Cme10g01083 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
Cme10g01083 241 CDD PHD_AL_plant 187 237 IPR044104 -
Cme10g01083 241 MobiDBLite consensus disorder prediction 149 171 - -
Cme10g01083 241 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Cme10g01083 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
Cme10g01083 241 SMART PHD_3 187 235 IPR001965 -
Cme10g01083 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01083 - - - csv:101211934 503.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01419 Cme-Chr1:18026997 Cme10g01083 Cme-Chr10:9532808 1.65E-17 transposed
Cme02g01122 Cme-Chr2:16193443 Cme10g01083 Cme-Chr10:9532808 8.35E-08 transposed
Cme03g00381 Cme-Chr3:5304957 Cme10g01083 Cme-Chr10:9532808 2.85E-19 transposed
Cme03g01394 Cme-Chr3:23448842 Cme10g01083 Cme-Chr10:9532808 3.24E-117 transposed
Cme05g01019 Cme-Chr5:14716559 Cme10g01083 Cme-Chr10:9532808 6.60E-16 transposed
Cme06g02215 Cme-Chr6:28527361 Cme10g01083 Cme-Chr10:9532808 5.22E-109 transposed
Cme08g01560 Cme-Chr8:15574262 Cme10g01083 Cme-Chr10:9532808 3.47E-08 transposed
Cme11g01413 Cme-Chr11:20969592 Cme10g01083 Cme-Chr10:9532808 5.73E-16 transposed
Cme12g00413 Cme-Chr12:6088450 Cme10g01083 Cme-Chr10:9532808 1.70E-27 transposed
Cme10g01083 Cme-Chr10:9532808 Cme04g02724 Cme-Chr4:32610893 2.08E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g55 . Blo13g00799 . . . Bpe15g01161 . . Cmo04g00150 Cmo04g01181 Cma04g01114 Cma04g00152 Car04g00146 . . . Cpe01g00130 . . . . . . . Cla07g00398 Cam07g0425 Cec07g0477 Cco07g0433 Clacu07g0425 Cmu07g0469 Cre07g0775 . . . . . . Chy10g00423 Cme10g01083 . Blo04g00232 Bda14g00249 . . . . . . . . . . . . Cpe01g01035 . . . . . . . . . . . . . . . . Csa05g00818 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02215 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 1.9e-113 405.6
Cme03g01394 . 9 250 Alfin-like Transcription Factor Family AT1G14510 74.4 2.1e-96 349.0
Cme01g02823 . 10 251 Alfin-like Transcription Factor Family AT1G14510 66.5 4.1e-92 334.7
Cme10g01083 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 2.8e-77 285.4
Cme04g02724 . 8 232 Alfin-like Transcription Factor Family AT1G14510 58.3 8.5e-74 273.9
Cme03g01394 . 1 252 Alfin-like Transcription Factor Family AT5G26210 77.2 2.4e-108 388.7
Cme01g02823 . 1 253 Alfin-like Transcription Factor Family AT5G26210 65.1 5.0e-98 354.4
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 7.5e-94 340.5
Cme10g01083 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 9.5e-81 297.0
Cme04g02724 . 8 234 Alfin-like Transcription Factor Family AT5G26210 56.5 1.6e-75 279.6
Cme03g01394 . 1 252 Alfin-like Transcription Factor Family AT3G42790 74.0 4.7e-101 364.4
Cme01g02823 . 1 253 Alfin-like Transcription Factor Family AT3G42790 63.8 1.7e-95 345.9
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 2.2e-90 328.9
Cme10g01083 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 2.4e-81 298.9
Cme04g02724 . 8 234 Alfin-like Transcription Factor Family AT3G42790 56.3 2.2e-74 275.8
Cme10g01083 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.4 2.3e-113 405.2
Cme04g02724 . 1 235 Alfin-like Transcription Factor Family AT5G05610 72.6 2.0e-101 365.5
Cme03g01394 . 8 252 Alfin-like Transcription Factor Family AT5G05610 65.3 1.9e-91 332.4
Cme01g02823 . 10 253 Alfin-like Transcription Factor Family AT5G05610 62.9 8.1e-90 327.0
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.1e-83 306.6
Cme10g01083 . 43 240 Alfin-like Transcription Factor Family AT3G11200 81.6 1.1e-96 349.7
Cme04g02724 . 43 235 Alfin-like Transcription Factor Family AT3G11200 74.3 7.1e-83 303.9
Cme03g01394 . 44 252 Alfin-like Transcription Factor Family AT3G11200 67.5 1.9e-75 279.3
Cme01g02823 . 44 253 Alfin-like Transcription Factor Family AT3G11200 64.8 5.4e-75 277.7
Cme06g02215 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.6e-69 258.8
Cme06g02215 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Cme03g01394 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.3e-65 245.0
Cme01g02823 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 2.3e-63 239.2
Cme10g01083 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.3e-53 206.8
Cme04g02724 . 8 130 Alfin-like Transcription Factor Family AT2G02470 70.8 5.6e-49 191.4
Cme03g01394 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 6.4e-74 273.9
Cme01g02823 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 2.4e-68 255.4
Cme06g02215 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.6e-67 250.4
Cme10g01083 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.4e-52 203.0
Cme04g02724 . 7 152 Alfin-like Transcription Factor Family AT5G20510 59.9 7.9e-48 187.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42094 PF12165 Alfin 2.10E-67 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g01083 Cme_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0