Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01083 ATGGCGTCAATATCTTCAAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGTCGCACGGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCGGCTGAGGAAGTTCCATCCGAGCTCCCTGAACCTGCGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGTAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTACTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGCAATGAGCGGAAGCGACTATTTAGTATGATCAATGATCTACCCACTCTATTTGAAGTTGCATCCGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCTAGAAACAGCACAAAGAGGTCACTAGATGGGTCGACTAGAAACAGCAATCCAAAACTACTTGAAGAGAGTTATGGAGAGGACGAAGATGAGCATGGTGACACACTCTGTGGAAGCTGTGGTGGGAACTACAACGCGGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTACCACGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAGTACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACTGTAG 726 47.66 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSTRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWYHGKCVRITPAKAENIKQYKCPSCSTKRGRL 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9532808 9543924 + MELO3C025197.2.1 Cme10g01083 339969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01083 241 MobiDBLite consensus disorder prediction 141 182 - -
Cme10g01083 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Cme10g01083 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Cme10g01083 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Cme10g01083 241 Pfam PHD-finger 188 236 IPR019787 -
Cme10g01083 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
Cme10g01083 241 CDD PHD_AL_plant 187 237 IPR044104 -
Cme10g01083 241 MobiDBLite consensus disorder prediction 149 171 - -
Cme10g01083 241 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Cme10g01083 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
Cme10g01083 241 SMART PHD_3 187 235 IPR001965 -
Cme10g01083 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01419 Cme-Chr1:18026997 Cme10g01083 Cme-Chr10:9532808 1.65E-17 transposed
Cme02g01122 Cme-Chr2:16193443 Cme10g01083 Cme-Chr10:9532808 8.35E-08 transposed
Cme03g00381 Cme-Chr3:5304957 Cme10g01083 Cme-Chr10:9532808 2.85E-19 transposed
Cme03g01394 Cme-Chr3:23448842 Cme10g01083 Cme-Chr10:9532808 3.24E-117 transposed
Cme05g01019 Cme-Chr5:14716559 Cme10g01083 Cme-Chr10:9532808 6.60E-16 transposed
Cme06g02215 Cme-Chr6:28527361 Cme10g01083 Cme-Chr10:9532808 5.22E-109 transposed
Cme08g01560 Cme-Chr8:15574262 Cme10g01083 Cme-Chr10:9532808 3.47E-08 transposed
Cme11g01413 Cme-Chr11:20969592 Cme10g01083 Cme-Chr10:9532808 5.73E-16 transposed
Cme12g00413 Cme-Chr12:6088450 Cme10g01083 Cme-Chr10:9532808 1.70E-27 transposed
Cme10g01083 Cme-Chr10:9532808 Cme04g02724 Cme-Chr4:32610893 2.08E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42094 PF12165 Alfin 2.10E-67 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01083 - - csv:101211934 503.056