Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01094 ATGTGCAGTGGCTCTAAGAATAAAGTTGCTTCCACGAATTCCGCCATGGAAGCTAGGTTTCTGAAGCTTAGCGATGGGGGTTTATTTTCTGAAAATTCGATCTTGCTTGAACTTTCAGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAAGGATTTGGATGTTGATGAGCCGAGCTGCTGGTATGGAAGAGGAATTGGATCAAAGAAGATGGGCTTTGAAGAAAGAACTCCGTTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGTACTTAATTGAAACAGGCAAGGTTGATGTCAACAGGGCCTGTGGTTCAGATTTGACCACTGCCCTTCACTGTGCTACTGCTGGTGGCTCTTGTTCTTCCCTTGAGACCATCAAGCTCTTGCTCGACGGATCTGCTGATGTCGATTGCGTCGACGCCTACGGGAGAAAACCTGTCGATTTGATTGTTTCAGCTTGCAGGATGGTGTTGAATACGGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGCTGATCTGAGCCTTTACCTTGGAGAAGACCAGCAGAAGATCACAGCTTCCCAATTCTCAAAAGAAGGAAGTGACAAGAAAGAGTATCCAGTTGATGTATCGCTGCCCGACATCAACAGTGGGATCTACGGTACCGATGATTTCAGGATGTATACTTTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCGCACGATTGGACCGAGTGCCCTTTCGTTCATCCCGGTGAGAACGCTAGGCGTAGAGACCCCAGGAAGTACCCATATAGTTGCGTTCCATGCCCTGAATTCCGCAAGGGGGCTTGTCCAAAGGCAGATTCCTGTGAGTATGCACATGGTGTTTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGTAAGGATGAGACTGGCTGCACAAGGAAAGTCTGCTTCTTTGCTCACAAACCTGATGAGTTGCGCCCAGTATATGCATCAACAGGCTCAGGCATGCCTTCACCCCGATCTCTTTCGAGCAGCACTGGAGATATGTCTACCGTGAGCCCGTTGGCTCTTGGTTCGTCATCGTTGTCGTTGCCAACAACCTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCTAAAAATGGAAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTACAGCTCCCTGGTAGTCGGTTAAAGACTACCTTGAGTGCAAGAGATTTGGATTTAGAGATGGAATTGCTCGGATTAGAAAAGAACGCAAGCCAATTACAACATCAACAACAGTTGATCGACGAGATTAGCCGGCTCTCGTCTCCTTCTTACTGGAATGCAGATGTAAGCAGGAGTGCAGAGATGAAGCCATCGAACCTGGATGACATGTTTGGATCATTAGATTCTTCCTTATTGTCTCAGTTGCAAGGCGCCTCATTAAAAACACCGATCTCAGCTCAAGTTCAATCCCCGACTGGGCTGCAGATGCGCCAAAACATGAACCAACTTCGTGCAAGTTACCCATCTAATAACCTATCATCCTCACCTGTAAAGAAACCCTCCTCTTTTGGCTTTGACTCATCAAGTGCAGTGGCAGCTGCAGTGATGAACTCAAGGTCTGCTGCCTTTTCAAAACGAAGCCAGAGTTTCATTGATCGAGCTGCAGTGTCCCGTCTTCCTGGGTTCACCGGAGCTGCAAATTCTGCAGCTACTATGTCTTCCCATCTCTCAGATTGGAACTCCCCTGATGGCAAACTAGACTGGGGAATGAATGGCAACGATCTCAACAAACTCAAGAAATCTGCTTCCTTCGGTATCCGAAACAACGGCATAGGAACTCCCACGTTCGCTCCTCCGGTAGAGGAACCTGATGTCTCTTGGGTTAACTCTTTGGTCAAAGATGTTCCCTCCGAAAGCTTTGGACTGTTTGGTGCCGAGAAGCGTCCATACAACCTCAAAAGGGAAATCAATGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCGGAGCAGGAGCAGATAGTGGCATAA 2064 48.11 MCSGSKNKVASTNSAMEARFLKLSDGGLFSENSILLELSASDDVEGFKREVEEKDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMFGSSKVVKYLIETGKVDVNRACGSDLTTALHCATAGGSCSSLETIKLLLDGSADVDCVDAYGRKPVDLIVSACRMVLNTGRKAMEMLLRGDGMAGEADLSLYLGEDQQKITASQFSKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKADSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPDELRPVYASTGSGMPSPRSLSSSTGDMSTVSPLALGSSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKTTLSARDLDLEMELLGLEKNASQLQHQQQLIDEISRLSSPSYWNADVSRSAEMKPSNLDDMFGSLDSSLLSQLQGASLKTPISAQVQSPTGLQMRQNMNQLRASYPSNNLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFSKRSQSFIDRAAVSRLPGFTGAANSAATMSSHLSDWNSPDGKLDWGMNGNDLNKLKKSASFGIRNNGIGTPTFAPPVEEPDVSWVNSLVKDVPSESFGLFGAEKRPYNLKREINEMLPSWMEQQLYAEQEQIVA 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9857173 9860032 + MELO3C026788.2.1 Cme10g01094 339980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01094 687 MobiDBLite consensus disorder prediction 334 385 - -
Cme10g01094 687 SUPERFAMILY Ankyrin repeat 68 158 IPR036770 -
Cme10g01094 687 MobiDBLite consensus disorder prediction 340 385 - -
Cme10g01094 687 Pfam Ankyrin repeats (3 copies) 75 144 IPR002110 GO:0005515
Cme10g01094 687 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Cme10g01094 687 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Cme10g01094 687 ProSiteProfiles Ankyrin repeat profile. 77 101 IPR002110 GO:0005515
Cme10g01094 687 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 19 685 - -
Cme10g01094 687 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Cme10g01094 687 SMART ANK_2a 112 144 IPR002110 GO:0005515
Cme10g01094 687 SMART ANK_2a 77 107 IPR002110 GO:0005515
Cme10g01094 687 PANTHER UNKEMPT FAMILY MEMBER 19 685 IPR045234 -
Cme10g01094 687 Gene3D - 30 174 IPR036770 -
Cme10g01094 687 ProSiteProfiles Ankyrin repeat region circular profile. 77 101 - -
Cme10g01094 687 Gene3D - 271 333 - -
Cme10g01094 687 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01806 Cme-Chr7:23508122 Cme10g01094 Cme-Chr10:9857173 6.62E-53 dispersed
Cme10g01094 Cme-Chr10:9857173 Cme11g01387 Cme-Chr11:20650326 0 dispersed
Cme10g01094 Cme-Chr10:9857173 Cme02g00207 Cme-Chr2:1614273 1.22E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42095 PF12796 Ank_2 2.40E-09 CL0465 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01094 - - csv:101203102 1275.0