Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01121 ATGGTTCCAGGCATCATAATGCAGCAGCAATCCTCTTCTGCAGTTTCTCCACACCATATCAATCCTCCGCCTTCCTCTCTTAGGTCACCTTCATCCACACCTCCCTCCGCCCACTCTCCGCTGCCTCTCACCACTCACGTCTCCAATTCCCACCGGGAGCCATGCGACCATGTTGCCGGACCAGTGCTGCAATCCGCCGCTGACTCTGCTGTAGCTATGGCTTGCCCACTCGCCAGGGTCCGCTTATCTGATATTGCCCCTTACGACGGTGCGCCTGCGGGGTCCTACGTGAGGGCGGTTGAGGCTTTGTCCGGATCCTTGACGAGGTATAATGCGGCCGTGATTGAATTGGAGAATGAAGCTGCTGCTCTCACTCGTTGCGGTCTTGAAGCGGCTAGGTTGTTTTTCAAAAGTAGAGCGCAAAGTGGAGGAAAGGGGCGCAGTGTTTATATGTATAGAGCTGGAAGAGCAGTGGAAGATTGGGACTCTTGTCCTCCCTGTATGGCTGATATTTTTAGATGCATGGGTAAAGCAGCTCGGGCTGCCTTGTGTGCAATAGCTAGGCATCTTCGTTTGAGAAGCGATGTTTTCAATAATTTGCTCGATGACACTCCACTTCCTGCTACTGATGTGTCCTCATCAGTGCTTGTTGCAATGCTCTTGCATAATAGCTCTTTGCACAATTGCAAGGGTTCTATTGGAGGAGGAAAGTCAGCAATGAATGTTGAGGTGGAGAAGGGGTTATTGACATTGTTTTCCTCAGACAATCCTGGTTTACAGGTTTGTGATCCCAATGGTCGCTGGTACCTAGCAGACGCTGTCTTGGCACCTGGAGATCTGTTACTGATTACCGGAAAGGCACTTAGCCATGCTACAGCTGGCCTTCGGCCTGCTGCATCATATAGAGTTGCTCCTGATCATTCCTTGGGCTCAAATTGTGTTGGGAGGACTTCCCTTGCATTTAGACTCATGCCCCAGACGAATGCCATACTAGACTGTTCTCCCATTGCAGCAGCTGGTCATGTCATCCCCCAAAGATATGGTCCAGTCTCTGTTAGCCAATTCATGGATGATCTTTCTGCTGAGGAAGATGTATTGTGCACTCATCTGGATAAGGATAATAATTGTATAGCTCGAAATGATCAAAACAAGGAAGCCTCGCTAAGAAGTGTTCTCTCAGATCCACTATCAGGTGCATTCCTTGAGGATGCGATGTTTGTTTCATGTGGACATTCATTTGGTGGTCTCATGCTGAGGAGGGTCATTGAGACGTCAAGGTGCACCATTTGCAACTCAGAAATTGATGCTGGGTCCTTGATTCCTAATCTAGCACTTAGAGCGGCAGCCTCAGCTGTGAAGCATGAAGATGATAGGAGGCTATTCCACAATGCTGCAGTGAGGAAGCGTCGGAAAGAAATGGGAGACCATATGGATCCAATGAGAAGATTAAACAGGGAAAATGGTGATCTTGCCATTGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCAGTCATCACATCCCAGTGTCTCAATGGCTGGTATTTGCTAAAGATCATTGGTACTGGAGAGAATGTTCGGTTGCAATATCGATCTCTTAGGAAGATCCTTAACACGACACCAGCTAATGATAATAGCGGTCCTCCACAGCCACTTCAGCACACTTGCTCATAA 1743 48.02 MVPGIIMQQQSSSAVSPHHINPPPSSLRSPSSTPPSAHSPLPLTTHVSNSHREPCDHVAGPVLQSAADSAVAMACPLARVRLSDIAPYDGAPAGSYVRAVEALSGSLTRYNAAVIELENEAAALTRCGLEAARLFFKSRAQSGGKGRSVYMYRAGRAVEDWDSCPPCMADIFRCMGKAARAALCAIARHLRLRSDVFNNLLDDTPLPATDVSSSVLVAMLLHNSSLHNCKGSIGGGKSAMNVEVEKGLLTLFSSDNPGLQVCDPNGRWYLADAVLAPGDLLLITGKALSHATAGLRPAASYRVAPDHSLGSNCVGRTSLAFRLMPQTNAILDCSPIAAAGHVIPQRYGPVSVSQFMDDLSAEEDVLCTHLDKDNNCIARNDQNKEASLRSVLSDPLSGAFLEDAMFVSCGHSFGGLMLRRVIETSRCTICNSEIDAGSLIPNLALRAAASAVKHEDDRRLFHNAAVRKRRKEMGDHMDPMRRLNRENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANDNSGPPQPLQHTCS 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10387421 10416355 - MELO3C020035.2.1 Cme10g01121 340007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01121 580 MobiDBLite consensus disorder prediction 1 56 - -
Cme10g01121 580 MobiDBLite consensus disorder prediction 31 49 - -
Cme10g01121 580 Gene3D - 101 364 IPR027443 -
Cme10g01121 580 SUPERFAMILY Clavaminate synthase-like 161 356 - -
Cme10g01121 580 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 69 576 - -
Cme10g01121 580 Coils Coil 100 120 - -
Cme10g01121 580 MobiDBLite consensus disorder prediction 1 22 - -
Cme10g01121 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 456 IPR013083 -
Cme10g01121 580 SUPERFAMILY RING/U-box 388 455 - -
Cme10g01121 580 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 69 576 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01121 - - - csv:101206682 1111.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00710 Cme-Chr7:6211450 Cme10g01121 Cme-Chr10:10387421 1.67E-40 dispersed
Cme10g01121 Cme-Chr10:10387421 Cme10g01252 Cme-Chr10:13251876 1.62E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1044 . . . . . . . . . . . . . . . . . Bhi07g00139 . . Lac13g1653 . . . . . . . . . . . . . . . . Chy10g00104 Cme10g01121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01011 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002937 2 6 1 0 1 1 2 1 1 2 2 1 2 2 2 1 1 3 2 1 2 2 2 2 3 2 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g01121 Cme_Chr10 FPKM 36.269566 37.702503 24.806559 27.365854 39.427376 52.075714 31.253412 30.118048 24.618597 24.994286