Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01141 ATGAGTATGAAGATGCAGCAGAGCCACCACTCAGTGGCTGTAAGGTTTAATGAGCAAATTGGAAGTAAAAAAGGGTCCACATTCATTCAAGCCAAGAGGGCTTGGCTTCCTAAGTTTCTATTGCTCTGGGTTCTGTTGGTGGCATTCATCAGTATGTTGATCTACAAAGGAATGGATGCTGATAACAAAGTTAGAAGAAAGGAAGTTCTGGGGAGTATGTGTGACCAGAGGGCAAGGATGCTTCAGGATCAATTTAGTGTCAGTGTCAACCATGTCCATGCTTTGGCCATTCTTATTTCCACTTTCCACTACTCCAAAAATGTATCAGCAATTGATCAGGAAACTTTTGCTGAGTACACGGCCCGAACAGCTTTCGAGCGGCCTTTGCTTAGTGGTGTGGCATTTGCACAAAGAGTAGTGCACTTTGAGCGAGAAAAATTTGAGAAACAGCATGGGTGGACTATAAAAACAATGGAAAGGGAACCATCACCTATAAAGGATGAGTATGCGCCAGTCATATTTTCCCAGGAGACAGTTTCCTATATCGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGAGAGAACATTTTGAGGTCAAGAGAAACAGGTAAAGCTGTTTTAACGAGCCCTTTCAGGCTACTGGGTTCTCATCATCTTGGAGTTGTGTTGACGATACCTGTTTATAAAACTAAGCTTCCTCTAAATCCAACAATGGATGAACGAACTCGAGCAACAGCAGGGTTAAACCAATCATTCAAACAAGCAGTGTCCTTTGTAATGAAAACCAAAGAGGAAACGCTAAGGCATTTATCATCAAACATTGTCAATGAGGTTGTTGCTAAATTTTGGTTAAACTTGCATCTCTATGCCTCAGTTCTCAATTTGTATGATAAGGCGAAGGACAATTCACAGAAATATGTTTATTTTCTGGATCAAGGACACAGCTACCTTGGTGGAGCATTTGATGTGGAATCGCTTGTGGAAAATTTACTTGGGCAACTTGCTGGAAATCAGGCAATTTTGGTGAATGTATACGATATCACGAACTACTCCGATCCCCTAGTAATGTATGGTCATCAATATGAAGATGGTGACATGTCTCTTTTACATGAGAGCAAACTAGATTTTGGAGATCCATTTAGAAAGCATCAGATGATATGCAGATATCATCAGAAAGCACCAACTTTATGGACGGCACTTACCACTGCATTCTTATTCTTTGTGATTGGATTGTTAGTGGGATATATCTTATACGGTGCAGCAACTCATATCGTTAAAGTGGAGGATGATTTCCATGAAATGCAAGAACTGAAAGTTCGAGCCGAAGCTGCTGATATTGCAAAATCTCAGTTTCTCGCCACGGTCTCTCATGAAATCAGGACACCCATGAATGGCATCCTTGGAATGCTTGCTTTACTTCTTGATACTGAGCTGAGTTCAACTCAAAGGGATTATGCTCAAACTGCTCAGGCCTGTGGAAAAGCACTGATAGCGTTAATAAATGAGGTGCTTGACCGGGCAAAAATTGAAGCTGGGAAGTTGGAGCTTGAAGCGGTTCCTTTCGACCTTAGATTGATACTAGATGATGTTTTATCTTTGTTTTCTGAAAAGTCAAGGCACAAGGGAGTAGAGTTGGCAGTATTCATTTCTGACAAAGTTCCTGAAATTGTTATGGGAGATCCTGGAAGGTTCAGACAAGTAATCACAAATCTCGTGGGCAACTCTGTTAAATTCACAGAACAAGGACATATATTTGTCAAAGTTCAATTAGCTGAACAATCAATGGTCTCTACGAATATCAAATCTGAAACTCACATGAACGGAAACTTAGAAGATGGTGCATCGCACAATAAACATCAGTTTGAAACCTTAAGTGGATTTGAGGCAGCTGATAACCAAAACAGTTGGGACACTTTTAAGCACCTAGCAAATGAGGAATTCCAACCAAACGGTTCAAGCAATCTCATGGCTACAAATGAAAGTTCTGATATTGTTACTGTCATGATATCTGTGGAAGATACAGGAATTGGGATTCCGTTAAGCGCACAAGGTCGGGTTTTTATGCGGTTCATGCAAGCAGATAGCTCAACATCCAGAAACTATGGTGGAACTGGTATTGGCTTAGACATCAGTAAGTGTTTGGTTGAACTTATGGGTGGCCAGATAAACTTTGTAAGCCGGCCTCAGGTTGGAAGCACATTCTCATTCACTGCTGTTTTTGGGAGATGTGAGAAGAAAGCGACAGTTAACATCAAAAAGTCTAATTTGGAGGAACTTCCTTCTGCATTTAGAGGATTGAAAGCAGTTGTAGTTGATGGGAAACCAGTTAGAGCTGCTGTTACCAAATACCATTTGAAAAGGCTTGGGATCCTGGTTGAAGTTGCTAGTAGTGTCAAGATGGCTGCAGCTTTATGGGGGAAAAATGGATCAGTTAGATCAAGCATGAGCACGGTGGAAATTGATAAAGCGAAGGAAATGGGTTTCTCTGACACCGTGATCATGAAACCATTGAGAGCAAGCATGATTGGTGCATGTCTTCAACAGGTGCTTGGCTCGGGAAAGAAACGACAACTTGGGAAGGACATGGCCAATGGCTCTAACTTTCTTAAAGGGCTGCTCTGTGGTAAGAAAATATTGGTCGTTGATGACAATAAGGTAAACCGAAGAGTTGCTGCAGGTGCTTTAAAGAAATTTGGTGCTGACGTAGAGTGTGTCGAGAGTGGGAAAGCTGCATTGGCATTGCTTCAACTGCCACACACTTTTGATGCTTGCTTTATGGATATTCAGATGCCTGAAATGGATGGATTTGAAGCAACCCGAAGAATCAGGATGATGGAGAGCAAGGAAAACGAGGTACTGATTAGGGAATCAAATGGCAAAGAAAATGCAAGGAAAGACGAGTGGCATGTTCCAATATTAGCCATGACCGCAGATGTAATTCATGCAACATACGACGAGTGTCTGAAATGTGGGATGGACGGATATGTATCGAAGCCATTTGAGGAAGAGAATCTTTACCAGGCAGTTGCCAAGTTCTTCAATACAAAGCCCATCACTGATTCATGA 3069 41.71 MSMKMQQSHHSVAVRFNEQIGSKKGSTFIQAKRAWLPKFLLLWVLLVAFISMLIYKGMDADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYSKNVSAIDQETFAEYTARTAFERPLLSGVAFAQRVVHFEREKFEKQHGWTIKTMEREPSPIKDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPLNPTMDERTRATAGLNQSFKQAVSFVMKTKEETLRHLSSNIVNEVVAKFWLNLHLYASVLNLYDKAKDNSQKYVYFLDQGHSYLGGAFDVESLVENLLGQLAGNQAILVNVYDITNYSDPLVMYGHQYEDGDMSLLHESKLDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFISDKVPEIVMGDPGRFRQVITNLVGNSVKFTEQGHIFVKVQLAEQSMVSTNIKSETHMNGNLEDGASHNKHQFETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNESSDIVTVMISVEDTGIGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSRPQVGSTFSFTAVFGRCEKKATVNIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILVEVASSVKMAAALWGKNGSVRSSMSTVEIDKAKEMGFSDTVIMKPLRASMIGACLQQVLGSGKKRQLGKDMANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALALLQLPHTFDACFMDIQMPEMDGFEATRRIRMMESKENEVLIRESNGKENARKDEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFNTKPITDS 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10840410 10848396 + MELO3C020055.2.1 Cme10g01141 340027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01141 1022 Gene3D - 873 1021 - -
Cme10g01141 1022 Gene3D - 58 110 - -
Cme10g01141 1022 Gene3D - 512 746 IPR036890 -
Cme10g01141 1022 Pfam CHASE domain 110 249 IPR006189 -
Cme10g01141 1022 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 560 740 IPR003594 -
Cme10g01141 1022 PANTHER TWO-COMPONENT HISTIDINE KINASE 314 815 - -
Cme10g01141 1022 ProSiteProfiles Histidine kinase domain profile. 455 743 IPR005467 -
Cme10g01141 1022 SMART HKATPase_4 560 743 IPR003594 -
Cme10g01141 1022 SMART HisKA_10 448 513 IPR003661 GO:0000155|GO:0007165
Cme10g01141 1022 Pfam His Kinase A (phospho-acceptor) domain 448 513 IPR003661 GO:0000155|GO:0007165
Cme10g01141 1022 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 502 738 IPR036890 -
Cme10g01141 1022 SUPERFAMILY CheY-like 876 1015 IPR011006 -
Cme10g01141 1022 SMART CHASE_2 107 360 IPR006189 -
Cme10g01141 1022 Coils Coil 498 518 - -
Cme10g01141 1022 ProSiteProfiles CHASE domain profile. 107 387 IPR006189 -
Cme10g01141 1022 Pfam Response regulator receiver domain 879 1010 IPR001789 GO:0000160
Cme10g01141 1022 PANTHER TWO-COMPONENT HISTIDINE KINASE 21 249 - -
Cme10g01141 1022 PANTHER TWO-COMPONENT HISTIDINE KINASE 815 1017 - -
Cme10g01141 1022 CDD HisKA 448 509 IPR003661 GO:0000155|GO:0007165
Cme10g01141 1022 SMART REC_2 877 1010 IPR001789 GO:0000160
Cme10g01141 1022 PANTHER HISTIDINE KINASE 4 21 249 - -
Cme10g01141 1022 PANTHER HISTIDINE KINASE 4 314 815 - -
Cme10g01141 1022 PANTHER HISTIDINE KINASE 4 815 1017 - -
Cme10g01141 1022 CDD HATPase_EvgS-ArcB-TorS-like 565 741 - -
Cme10g01141 1022 ProSiteProfiles Response regulatory domain profile. 878 1014 IPR001789 GO:0000160
Cme10g01141 1022 CDD REC_hyHK_CKI1_RcsC-like 879 1010 - -
Cme10g01141 1022 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 434 514 IPR036097 GO:0000155|GO:0007165
Cme10g01141 1022 Gene3D - 421 511 - -
Cme10g01141 1022 PRINTS Bacterial sensor protein C-terminal signature 668 682 IPR004358 GO:0016310|GO:0016772
Cme10g01141 1022 PRINTS Bacterial sensor protein C-terminal signature 686 696 IPR004358 GO:0016310|GO:0016772
Cme10g01141 1022 PRINTS Bacterial sensor protein C-terminal signature 703 721 IPR004358 GO:0016310|GO:0016772
Cme10g01141 1022 PRINTS Bacterial sensor protein C-terminal signature 727 740 IPR004358 GO:0016310|GO:0016772
Cme10g01141 1022 Gene3D CHASE domain 111 394 IPR042240 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02373 Cme-Chr6:30968481 Cme10g01141 Cme-Chr10:10840410 2.79E-09 dispersed
Cme07g00153 Cme-Chr7:986984 Cme10g01141 Cme-Chr10:10840410 4.18E-61 dispersed
Cme09g01302 Cme-Chr9:18034455 Cme10g01141 Cme-Chr10:10840410 0 dispersed
Cme10g01141 Cme-Chr10:10840410 Cme11g00934 Cme-Chr11:13012937 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42098 PF02518 HATPase_c 1.60E-31 CL0025 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01141 K14489 - csv:101204531 1339.71