Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01191 ATGGATAAAACTCAAACTCCATTTGATTTTAACTCTCTTTTTAGATACCCATTTGGGGATTTTGGGGTTTTCTTTACCCAGTGTCTTGATGTGTTCTGTTTTTCACTTAAGAAGAAGGAGAAATGGAAGATTCTGAGACAAAACCCTAATGGGTTTGTTTTGTTGCTTTTGTTGCTTAATTTGGTTCCTGTTTTGAGTCAGGATTGGGACGGTGTGGTTGTGACTCAAGCTGATTTTCAATCCCTTCAGGCATTTAAGCAAGAGCTTGATGATCCCAAAGGGTTTTTGAAGAGTTGGAATGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGCTGGGATTAAATGTGCTAAGGGACAAGTTATTGTAATACAGCTTCCATGGAAGGGATTAGGGGGTAGAATCACTGAGAAGATTGGCCAACTTCAAGCACTTAGGAAGCTTAGTTTACATGATAACTCTATTGGTGGATCAATCCCTTCTTCATTGGGCCTTCTTCCAAATCTTAGAGGGGTCCAGTTGTTCAATAATCGACTTTCGGGTTCGATTCCGGCTTCATTGGGACTTTCTCCAGTACTTCAAACTCTTCACATTAGTAACAATTTGCTCACTGGAACAATACCACCTACTTTGGCCAACTCCACCAAGCTCTATTGGCTTAACTTGAGCTTGAACTCGCTTTCGGGTCCGATTCCAACTACTCTTGCTCGTTCAGTGTCCCTTACTTTCCTTGCTCTTCAACATAACAATCTCTCAGGCAGCATTCCAGACTCTTGGGGTGGTGACGAGCAAAACCGTGTGTTTCAGCTCAAGTCTCTGACTCTTGATGGCAATCTGCTCTCAGGTACCATACCAACTTCTTTAAGCAAGTTAAGTGAGCTTCAAGTTATTTCCCTTAGCTACAATAGGTTAAATGGTGGCATTCCTGAAGAAATTAGTAGGCTTTCTCTGCTCAAAACATTGGATGTTTCTAATAATTTCCTTAATGGAAGTATGCCCCAAAGTTTTGATAGATTGAGAAACCTCTCTATACTCAACTTGAGTAGAAACAGATTCAATGGTCAAATTCCTGAAACTTTAGGGAACGTTTCAACACTTAAACAACTTGATTTATCTCAGAACAATCTAAGTGGAGAAATTCCAGCTTCCCTTGCTGATTTGCAAGGTCTTCAATCCTTAAATGTCTCATACAACAACCTTTCGGGTCCGGTCCCTCCAGCTCTCGCTGAAAAATTCAATGCAAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTTCGATTTTGTGCCCGTCCCCAGCCCCTTCTCAAGAAGCTTCTGCTCCTCCACCGGAAAGTTCGACAACCCGACATAGGAAGTTAAGTACTAAAGATATAATCCTCATAGCAGCAGGAGCCCTCCTTCTGGTATTGGTTATAGTTTTCTTTATATTGCTCTGCTGCTTGATAAGGAAAAGGGCTGCTTCAAAAGGAAAGGATGGTGGTGAAGCTGGAGCAGGGGCTGCAAGGGCCGAGAAGGGAGTCCCCCCGACTAGCAGTGAAGTTGAAGCGGCTGGAGGTGGGGATGCTGGTGGGAAGCTCGTCCATTTCGACGGGCAAACGGTCTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACGTTGGAGGATGGAAATCAAGTTGCGGTGAAGAGATTGAGAGAGAAAATCACTAAAAGCCAAAAGGAATTTGAAGCAGAGGTCAACATACTTGGCAAGATCAGACATCCAAATCTATTAGCTTTAAGAGCTTATTACTTGGGACCCAAAGGAGAGAAGCTTCTCGTTTTTGATTATATGCCGAATGGAAGTCTCGCAACGTTCCTGCACGCTCGTGGACCGGACACGTCCATTGATTGGCCAACAAGGATGAAGATAGCTCAGGGTATGACGCGTGGCCTGTGTCACCTTCACACGCACGAGAACAGCATCCATGGAAACCTGACATCAAGCAACATTCTACTTGATGAGTACATAAACGCTAAGATTGCAGATTTTGGCTTGTCAAGGTTGATGACAGCAGCTGCAAGCTCAAATGTGATAGCAACAGCCGGGGCACTTGGGTACCGAGCACCAGAACTCTCAAAGCTGAAGAAAGCAAACACAAAAACCGATATTTACAGCCTTGGAGTCATCATATTGGAACTCTTGACTGGTAAGTCCCCCGGTGAAGCAATGAACGGAGTCGATTTACCTCAATGGGTTGCATCGATCGTCAAAGAGGAGTGGACTAATGAAGTTTTCGATTTGGAGCTGATGAGAGATGCATCTACCATTGGAGATGAGTTACTAAACACTCTGAAACTCGCTTTGCATTGTGTCGACCCTTCACCGTCAGCAAGACCGGAAGTTCAACAAGTTTTGCAACAACTGGAAGAGATTAGGCCAGAAACTGCTCCAAGTTCTGGGGATGATGGAATAGGAGGAGGAGCCCCTTCAACAAGTGAGTGA 2517 44.22 MDKTQTPFDFNSLFRYPFGDFGVFFTQCLDVFCFSLKKKEKWKILRQNPNGFVLLLLLLNLVPVLSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWAGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNSIGGSIPSSLGLLPNLRGVQLFNNRLSGSIPASLGLSPVLQTLHISNNLLTGTIPPTLANSTKLYWLNLSLNSLSGPIPTTLARSVSLTFLALQHNNLSGSIPDSWGGDEQNRVFQLKSLTLDGNLLSGTIPTSLSKLSELQVISLSYNRLNGGIPEEISRLSLLKTLDVSNNFLNGSMPQSFDRLRNLSILNLSRNRFNGQIPETLGNVSTLKQLDLSQNNLSGEIPASLADLQGLQSLNVSYNNLSGPVPPALAEKFNASSFVGNIQLCGFSGSILCPSPAPSQEASAPPPESSTTRHRKLSTKDIILIAAGALLLVLVIVFFILLCCLIRKRAASKGKDGGEAGAGAARAEKGVPPTSSEVEAAGGGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLATFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHTHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGIGGGAPSTSE 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12091673 12095274 - MELO3C020091.2.1 Cme10g01191 340077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01191 838 Gene3D Ribonuclease Inhibitor 311 434 IPR032675 -
Cme10g01191 838 Pfam Protein tyrosine and serine/threonine kinase 548 813 IPR001245 GO:0004672|GO:0006468
Cme10g01191 838 SUPERFAMILY Protein kinase-like (PK-like) 549 817 IPR011009 -
Cme10g01191 838 CDD STKc_IRAK 551 816 - -
Cme10g01191 838 Pfam Leucine rich repeat 340 400 IPR001611 GO:0005515
Cme10g01191 838 Pfam Leucine rich repeat 269 326 IPR001611 GO:0005515
Cme10g01191 838 Pfam Leucine rich repeat 192 251 IPR001611 GO:0005515
Cme10g01191 838 Gene3D Transferase(Phosphotransferase) domain 1 623 826 - -
Cme10g01191 838 SUPERFAMILY L domain-like 115 409 - -
Cme10g01191 838 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 19 338 - -
Cme10g01191 838 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 337 821 - -
Cme10g01191 838 Pfam Leucine rich repeat N-terminal domain 77 116 IPR013210 -
Cme10g01191 838 Gene3D Phosphorylase Kinase; domain 1 551 622 - -
Cme10g01191 838 Gene3D Ribonuclease Inhibitor 237 310 IPR032675 -
Cme10g01191 838 MobiDBLite consensus disorder prediction 492 520 - -
Cme10g01191 838 MobiDBLite consensus disorder prediction 816 838 - -
Cme10g01191 838 ProSiteProfiles Protein kinase domain profile. 545 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g01191 838 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 19 338 - -
Cme10g01191 838 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 337 821 - -
Cme10g01191 838 SMART LRR_typ_2 291 314 IPR003591 -
Cme10g01191 838 SMART LRR_typ_2 142 166 IPR003591 -
Cme10g01191 838 SMART LRR_typ_2 315 338 IPR003591 -
Cme10g01191 838 SMART LRR_typ_2 387 411 IPR003591 -
Cme10g01191 838 SMART LRR_typ_2 339 363 IPR003591 -
Cme10g01191 838 Gene3D Ribonuclease Inhibitor 75 236 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01718 Cme-Chr1:23994347 Cme10g01191 Cme-Chr10:12091673 5.14E-10 dispersed
Cme04g02753 Cme-Chr4:32790058 Cme10g01191 Cme-Chr10:12091673 0 dispersed
Cme10g01191 Cme-Chr10:12091673 Cme07g00174 Cme-Chr7:1142574 1.78E-07 dispersed
Cme10g01191 Cme-Chr10:12091673 Cme02g01293 Cme-Chr2:18860631 2.38E-07 transposed
Cme10g01191 Cme-Chr10:12091673 Cme05g01954 Cme-Chr5:28090976 1.56E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65210 PF07714 PK_Tyr_Ser-Thr 9.20E-41 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01191 - - csv:101214895 1476.07