Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01211 ATGGGAGCTGCTAATCTCCCGTGTTTTTCATCGCTATTTGGAGTTTTTCCACTTCAAAACAATGCTCCCAACAAACTTTTACCATTTTCTTCAACTCTTTCAAAACCCCTTTACCGATTCAACAGGATTTGCTGCGGAGTGCCTGAGAGTGGAATTCAGCAAAACCCCTCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGACGAGTACAATTTAGCTATGAAGAAGATGATGAGGAACCCCTATGAGTATCACCATGAACTGGGTATGAACTATACCGTGATAGCTGACAATTTGATTGTCGGGTCCCAGCCTCAAAAACCTGAAGATATCAATTTCTTGAAAGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTTGAGTACTGGGGAATCAACTTACAATCGATTATAGAAAGATGTAAAGAACTTGGAATTCGTCATATGAGGCAACCGGCAAAAGATTTCGATCCTGATTCCCTGAGAACTGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCAATTTCAAAGGGCAAAGGAAAAGTATATGTGCATTGCACTGCTGGACTTGGAAGAGCCCCGGCCGTTGCAATAGCCTACTTGTATTGGTTTTGCGGAATGAATTTAAATACAGCATATGAAGCACTGACCTCTAAAAGACCTTGTGGACCAAGTAAAAGAGCGATTCGTGGAGCGACATACGATCTATCTAAAAATGATCCATGGAAGGAACCATTTGAGAGCCTTCCAGATAATGCATTTGAGGATATTGCAGATTGGGAAAGAAACTTGATTTGGGATCGGGTTCGTTCTCTCCGTAGAACTTAA 849 41.93 MGAANLPCFSSLFGVFPLQNNAPNKLLPFSSTLSKPLYRFNRICCGVPESGIQQNPSTSRPSSSKNRMDEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGINLQSIIERCKELGIRHMRQPAKDFDPDSLRTGLPKAVSLLEWAISKGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPSKRAIRGATYDLSKNDPWKEPFESLPDNAFEDIADWERNLIWDRVRSLRRT 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12400395 12407466 - MELO3C020114.2.1 Cme10g01211 340097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01211 282 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 28 281 - -
Cme10g01211 282 Gene3D Protein tyrosine phosphatase superfamily 75 282 IPR029021 -
Cme10g01211 282 Pfam Dual specificity phosphatase, catalytic domain 116 229 IPR000340 GO:0008138|GO:0016311
Cme10g01211 282 SMART dsp_5 92 246 IPR020422 GO:0006470|GO:0008138
Cme10g01211 282 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 28 281 - -
Cme10g01211 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470|GO:0008138
Cme10g01211 282 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203|GO:0046838
Cme10g01211 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 232 IPR029021 -
Cme10g01211 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01211 - - - cmo:103496723 577.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00122 Cme-Chr10:855992 Cme10g01211 Cme-Chr10:12400395 2.69E-46 dispersed
Cme10g01211 Cme-Chr10:12400395 Cme11g01934 Cme-Chr11:27371643 1.96E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme01g00724 . 76 385 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 1.6e-120 429.5
Cme01g00723 . 76 318 Protein tyrosine phosphatase (PTP) family AT1G71860 62.0 5.8e-86 314.7
Cme11g01934 . 32 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-39 159.8
Cme05g00319 . 1 124 Protein tyrosine phosphatase (PTP) family AT2G04550 56.8 3.7e-39 158.3
Cme10g00122 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 7.2e-114 407.1
Cme10g01211 . 39 282 Protein tyrosine phosphatase (PTP) family AT3G10940 74.7 1.8e-109 392.5
Cme04g01886 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.3e-204 707.2
Cme11g01505 . 2 192 Protein tyrosine phosphatase (PTP) family AT2G32960 54.2 3.4e-62 235.3
Cme02g00915 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 3.4e-54 208.8
Cme05g02021 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.8e-79 293.1
Cme11g01505 . 51 192 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.3e-64 243.0
Cme02g00915 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.0e-57 219.2
Cme02g00915 . 3 200 Protein tyrosine phosphatase (PTP) family AT3G02800 68.0 3.2e-79 291.6
Cme11g01505 . 44 190 Protein tyrosine phosphatase (PTP) family AT3G02800 62.8 2.1e-51 199.1
Cme10g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 6.1e-62 236.1
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme01g00074 . 11 612 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 2.9e-221 765.0
Cme08g00594 . 31 563 Protein tyrosine phosphatase (PTP) family AT3G19420 56.2 1.3e-165 580.1
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme11g01896 . 17 216 Protein tyrosine phosphatase (PTP) family AT3G44620 51.5 1.2e-54 210.3
Cme06g02484 . 27 320 Protein tyrosine phosphatase (PTP) family AT2G35320 64.3 3.3e-112 401.7
Cme08g02497 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 68.6 2.3e-275 944.9
Cme08g02497 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 2.9e-251 864.8
Cme08g02497 . 86 674 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 1.2e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012743 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 28