Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01211 ATGGGAGCTGCTAATCTCCCGTGTTTTTCATCGCTATTTGGAGTTTTTCCACTTCAAAACAATGCTCCCAACAAACTTTTACCATTTTCTTCAACTCTTTCAAAACCCCTTTACCGATTCAACAGGATTTGCTGCGGAGTGCCTGAGAGTGGAATTCAGCAAAACCCCTCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGACGAGTACAATTTAGCTATGAAGAAGATGATGAGGAACCCCTATGAGTATCACCATGAACTGGGTATGAACTATACCGTGATAGCTGACAATTTGATTGTCGGGTCCCAGCCTCAAAAACCTGAAGATATCAATTTCTTGAAAGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTTGAGTACTGGGGAATCAACTTACAATCGATTATAGAAAGATGTAAAGAACTTGGAATTCGTCATATGAGGCAACCGGCAAAAGATTTCGATCCTGATTCCCTGAGAACTGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCAATTTCAAAGGGCAAAGGAAAAGTATATGTGCATTGCACTGCTGGACTTGGAAGAGCCCCGGCCGTTGCAATAGCCTACTTGTATTGGTTTTGCGGAATGAATTTAAATACAGCATATGAAGCACTGACCTCTAAAAGACCTTGTGGACCAAGTAAAAGAGCGATTCGTGGAGCGACATACGATCTATCTAAAAATGATCCATGGAAGGAACCATTTGAGAGCCTTCCAGATAATGCATTTGAGGATATTGCAGATTGGGAAAGAAACTTGATTTGGGATCGGGTTCGTTCTCTCCGTAGAACTTAA 849 41.93 MGAANLPCFSSLFGVFPLQNNAPNKLLPFSSTLSKPLYRFNRICCGVPESGIQQNPSTSRPSSSKNRMDEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGINLQSIIERCKELGIRHMRQPAKDFDPDSLRTGLPKAVSLLEWAISKGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPSKRAIRGATYDLSKNDPWKEPFESLPDNAFEDIADWERNLIWDRVRSLRRT 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12400395 12407466 - MELO3C020114.2.1 Cme10g01211 340097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01211 282 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 28 281 - -
Cme10g01211 282 Gene3D Protein tyrosine phosphatase superfamily 75 282 IPR029021 -
Cme10g01211 282 Pfam Dual specificity phosphatase, catalytic domain 116 229 IPR000340 GO:0008138|GO:0016311
Cme10g01211 282 SMART dsp_5 92 246 IPR020422 GO:0006470|GO:0008138
Cme10g01211 282 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 28 281 - -
Cme10g01211 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470|GO:0008138
Cme10g01211 282 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203|GO:0046838
Cme10g01211 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 232 IPR029021 -
Cme10g01211 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00122 Cme-Chr10:855992 Cme10g01211 Cme-Chr10:12400395 2.69E-46 dispersed
Cme10g01211 Cme-Chr10:12400395 Cme11g01934 Cme-Chr11:27371643 1.96E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01211 - - cmo:103496723 577.4