Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01224 ATGTCCAAAGAAAGAGAGAGATTCGATGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCCAATATTCCTCCACAACAAATTATGGGGAGAAGACACTCATTGCAGGGTTCTCCTGGAGCTCTCAACACCATTACTCCATGTGCAGCCTGCAAACTTTTAAGAAGAAGATGTGCTCAAGAATGTCCCTTCTCCCCATACTTTTCTCCCCACGAGCCTCATAAATTTGCCTCTGTCCACAAAGTTTTCGGCGCGAGCAACGTCTCGAAGATGCTCATGGAAGTTTCCGAGAATCAAAGAGCAGATGCCGCAAACAGCTTAGTTTATGAAGCTAATGTGAGGTTAAGAGATCCTGTTTATGGTTGTATGGGTGCCATTTCAGCCCTACAACACCAAATTCAATCCTTACAAGCTGAGCTCAATGCTGTGAGAGCTGAGATTTTAAGACACAAATTTAGAGAAGCTAATAATATGATTCACTCTTCTCCTCAACAACAACATGTGCCTTTTCTTTCTTCTTCTTCTTCTACGGAGGTTGTTTCGGTTGCCCTGCCACCACCGCCTCCACCGCTACCTCCGCCGCATCATCATGATGCTTCTTCTTCTTCATCCTCTTTGTACAACCGACCGACGGTGGCAGCTGCGGCTGATTATAGTACTATTTCAAGTGATGAAAATGTTACCTACTTTGTTAGTACTTCTAGTAGTGGTCATCAATTAAATTCTTAG 735 43.4 MSKERERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQGSPGALNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQSLQAELNAVRAEILRHKFREANNMIHSSPQQQHVPFLSSSSSTEVVSVALPPPPPPLPPPHHHDASSSSSSLYNRPTVAAAADYSTISSDENVTYFVSTSSSGHQLNS 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12573051 12575257 + MELO3C020121.2.1 Cme10g01224 340110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01224 244 Pfam Lateral organ boundaries (LOB) domain 49 146 IPR004883 -
Cme10g01224 244 MobiDBLite consensus disorder prediction 184 198 - -
Cme10g01224 244 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Cme10g01224 244 MobiDBLite consensus disorder prediction 181 209 - -
Cme10g01224 244 Coils Coil 128 155 - -
Cme10g01224 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 35 232 - -
Cme10g01224 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01034 Cme-Chr3:19570987 Cme10g01224 Cme-Chr10:12573051 1.88E-78 dispersed
Cme10g01224 Cme-Chr10:12573051 Cme12g00980 Cme-Chr12:17143350 1.10E-49 dispersed
Cme10g01224 Cme-Chr10:12573051 Cme09g00420 Cme-Chr9:3984698 3.73E-46 transposed
Cme10g01224 Cme-Chr10:12573051 Cme04g01850 Cme-Chr4:26268072 8.83E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42099 PF03195 LOB 1.60E-40 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01224 - - csv:101219425 417.542