Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme10g01224 | ATGTCCAAAGAAAGAGAGAGATTCGATGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCCAATATTCCTCCACAACAAATTATGGGGAGAAGACACTCATTGCAGGGTTCTCCTGGAGCTCTCAACACCATTACTCCATGTGCAGCCTGCAAACTTTTAAGAAGAAGATGTGCTCAAGAATGTCCCTTCTCCCCATACTTTTCTCCCCACGAGCCTCATAAATTTGCCTCTGTCCACAAAGTTTTCGGCGCGAGCAACGTCTCGAAGATGCTCATGGAAGTTTCCGAGAATCAAAGAGCAGATGCCGCAAACAGCTTAGTTTATGAAGCTAATGTGAGGTTAAGAGATCCTGTTTATGGTTGTATGGGTGCCATTTCAGCCCTACAACACCAAATTCAATCCTTACAAGCTGAGCTCAATGCTGTGAGAGCTGAGATTTTAAGACACAAATTTAGAGAAGCTAATAATATGATTCACTCTTCTCCTCAACAACAACATGTGCCTTTTCTTTCTTCTTCTTCTTCTACGGAGGTTGTTTCGGTTGCCCTGCCACCACCGCCTCCACCGCTACCTCCGCCGCATCATCATGATGCTTCTTCTTCTTCATCCTCTTTGTACAACCGACCGACGGTGGCAGCTGCGGCTGATTATAGTACTATTTCAAGTGATGAAAATGTTACCTACTTTGTTAGTACTTCTAGTAGTGGTCATCAATTAAATTCTTAG | 735 | 43.4 | MSKERERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQGSPGALNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQSLQAELNAVRAEILRHKFREANNMIHSSPQQQHVPFLSSSSSTEVVSVALPPPPPPLPPPHHHDASSSSSSLYNRPTVAAAADYSTISSDENVTYFVSTSSSGHQLNS | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 12573051 | 12575257 | + | MELO3C020121.2.1 | Cme10g01224 | 340110 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme10g01224 | 244 | Pfam | Lateral organ boundaries (LOB) domain | 49 | 146 | IPR004883 | - | |
Cme10g01224 | 244 | MobiDBLite | consensus disorder prediction | 184 | 198 | - | - | |
Cme10g01224 | 244 | ProSiteProfiles | LOB domain profile. | 48 | 149 | IPR004883 | - | |
Cme10g01224 | 244 | MobiDBLite | consensus disorder prediction | 181 | 209 | - | - | |
Cme10g01224 | 244 | Coils | Coil | 128 | 155 | - | - | |
Cme10g01224 | 244 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 15 | 35 | 232 | - | - | |
Cme10g01224 | 244 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 35 | 232 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01034 | Cme-Chr3:19570987 | Cme10g01224 | Cme-Chr10:12573051 | 1.88E-78 | dispersed | |
Cme10g01224 | Cme-Chr10:12573051 | Cme12g00980 | Cme-Chr12:17143350 | 1.10E-49 | dispersed | |
Cme10g01224 | Cme-Chr10:12573051 | Cme09g00420 | Cme-Chr9:3984698 | 3.73E-46 | transposed | |
Cme10g01224 | Cme-Chr10:12573051 | Cme04g01850 | Cme-Chr4:26268072 | 8.83E-46 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42099 | PF03195 | LOB | 1.60E-40 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme10g01224 | - | - | csv:101219425 | 417.542 |