Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01247 ATGGCACCTCCTTTTTCTTACTCACCCTTTTCCTCTCTCTTTCTTCTTCCTTTATTCTTCGTCTTCACCTTCGCTGACTACGGTGGCTGGCAGAGCGGCCACGCCACCTTTTATGGTGGCGGTGACGCTTCTGGCACCATGGGTGGAGCTTGTGGGTATGGAAATTTATACAGCCAAGGGTATGGCACGAATACGGTGGCGTTGAGCACGACACTATTCAACAATGGACTAAGTTGTGGGGCTTGCTTCGAAATGACTTGTACGAACGACCCTAAATGGTGCCTTCCTGGAACCATTAGAGTCACTGCCACCAACTTTTGCCCTCCCAACTTTGCGCTCCCTAACAACAATGGCGGATGGTGCAACCCTCCTCTCCAACACTTCGACATGGCTGAACCTGCCTTCCTTCAAATCGCTCAATACCGAGCCGGTATCGTCCCCGTCTCCTTTCGAAGGGTACCATGTATGAAGAAGGGTGGAGTGAGGTTCACAATTAATGGCCACTCGTACTTCAACCTCGTTTTGATCACAAACGTCGGTGGTGCGGGCGATGTCCACGCCGTGTCAATAAAGGGGTCTCGAACTGGATGGCAAGCCATGTCTAGAAATTGGGGCCAAAATTGGCAAAGCAACAACTATCTGAATGGCCAAGGCCTTTCCTTTCAAGTCACTCTTAGTGATGGTCACACTCTCACTGCCTATAACCTCGTTCCTTCCAATTGGCAATTTGGCCAAACCTATGAAGGCCCTCAATTCTAA 759 50.07 MAPPFSYSPFSSLFLLPLFFVFTFADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTTLFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGHTLTAYNLVPSNWQFGQTYEGPQF 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13121106 13125173 - MELO3C020143.2.1 Cme10g01247 340133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01247 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Cme10g01247 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Cme10g01247 252 Gene3D - 21 156 IPR036908 -
Cme10g01247 252 PANTHER EXPANSIN-A15 16 252 IPR002963 GO:0009664
Cme10g01247 252 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Cme10g01247 252 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Cme10g01247 252 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Cme10g01247 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Cme10g01247 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Cme10g01247 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Cme10g01247 252 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Cme10g01247 252 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Cme10g01247 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Cme10g01247 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Cme10g01247 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Cme10g01247 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Cme10g01247 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Cme10g01247 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Cme10g01247 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Cme10g01247 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Cme10g01247 252 PANTHER EXPANSIN 16 252 - -
Cme10g01247 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Cme10g01247 252 Gene3D - 160 252 IPR036749 -
Cme10g01247 252 SUPERFAMILY Barwin-like endoglucanases 17 178 IPR036908 -
Cme10g01247 252 Pfam Lytic transglycolase 65 150 IPR009009 -
Cme10g01247 252 SMART dpbb_1 65 150 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01023 Cme-Chr3:19365612 Cme10g01247 Cme-Chr10:13121106 9.57E-148 dispersed
Cme05g00939 Cme-Chr5:12976236 Cme10g01247 Cme-Chr10:13121106 1.51E-128 dispersed
Cme09g00257 Cme-Chr9:1954077 Cme10g01247 Cme-Chr10:13121106 8.71E-127 dispersed
Cme10g01247 Cme-Chr10:13121106 Cme11g01314 Cme-Chr11:19942997 3.03E-124 dispersed
Cme10g01247 Cme-Chr10:13121106 Cme10g00403 Cme-Chr10:2578552 1.06E-139 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01247 - K20628 csv:101209633 501.901