Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01249 ATGGAACTCCCCAATCCCACCAATCAAATGGCTTCCTCTTCCAACCCCACTCCCCCATTTCGCGGTTCCTTCCACCGTCGAGCTCATTCCGAGGTCCATTTCCGGATTCCTGACGATCTCGATCTAGTCTCCGACCCTTTCGACGCCCCTTCTTCTGGATTTGAAGATCTGGGCTTTGAGGATGATCTCTTGTGTACTTTCATGGACATCGAGAAGATCGGATCTAAAATCGAAAATGGGTCTTCGTCAAATCCTGCAATGGCTGCCGGTGGTACTGGGGGGGTGAATGTTGAAGGGGAGAAAATCTCCCGCCCCAGGCACCGTCATAGCAATTCTGCTGATGGGTCTTCCATTTTGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCTGATAAGCTCGCTGAGTTGTGGACTATTGATCCTAAACGTGCCAAGAGGATTTTGGCAAATAGACAGTCTGCTGCTCGGTCAAAAGAGAGGAAAGCTCGCTACATAATGGAACTTGAGAGAAAAGTTCAAAGCCTTCAGACCGAAGCGACAACTCTCTCTGCACAGCTCACATTGTATCAGAGAGATACCACTGGGCTTTCAACCGAAAACTCAGAGCTCAAACTTCGTTTACAAGCTATGGAACAGCAAGCCCATTTACGCGATGCTCTAAATGAAGCTTTGAAAAAAGAAGTTGAGCGGCTCAAGATTGCGACGGGAGAAGTAATGACAGCTACCGATTCGTATAACTTCGGAATGCCTCAAGTTTCATATCCCCAATCTTGCTTTTCACACCAACCACAACCTGGGCAACACAACCCACAGAGGATGACGACGCAAAGACCCCAAGTTCAACCATTCCATTCTAATTTACCAAACCCACATCAGGCTTTGTTTGTTGCATCGCACCAGCCTCATGCCTTAACAGAAATGTTTCAGCAGGATCCTATTACCCGATTGCAGGGTCTCGATATTGGTAGCAGAGGCACAGAAATAAAGCCAGAAGGTTCCTCAATATCAGTCAGTGAAAGTAGCAGCACATTTTAA 1035 47.34 MELPNPTNQMASSSNPTPPFRGSFHRRAHSEVHFRIPDDLDLVSDPFDAPSSGFEDLGFEDDLLCTFMDIEKIGSKIENGSSSNPAMAAGGTGGVNVEGEKISRPRHRHSNSADGSSILESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTTGLSTENSELKLRLQAMEQQAHLRDALNEALKKEVERLKIATGEVMTATDSYNFGMPQVSYPQSCFSHQPQPGQHNPQRMTTQRPQVQPFHSNLPNPHQALFVASHQPHALTEMFQQDPITRLQGLDIGSRGTEIKPEGSSISVSESSSTF 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13141141 13146468 - MELO3C020145.2.1 Cme10g01249 340135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01249 344 PANTHER BZIP TRANSCRIPTION FACTOR 18 7 341 - -
Cme10g01249 344 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 140 203 IPR004827 GO:0003700|GO:0006355
Cme10g01249 344 MobiDBLite consensus disorder prediction 1 20 - -
Cme10g01249 344 MobiDBLite consensus disorder prediction 258 277 - -
Cme10g01249 344 Coils Coil 158 185 - -
Cme10g01249 344 MobiDBLite consensus disorder prediction 1 24 - -
Cme10g01249 344 CDD bZIP_plant_RF2 143 192 IPR044759 GO:0003700|GO:0006355
Cme10g01249 344 Gene3D - 141 192 - -
Cme10g01249 344 SUPERFAMILY Leucine zipper domain 142 193 IPR046347 GO:0003700|GO:0006355
Cme10g01249 344 MobiDBLite consensus disorder prediction 320 344 - -
Cme10g01249 344 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 341 - -
Cme10g01249 344 MobiDBLite consensus disorder prediction 329 344 - -
Cme10g01249 344 Coils Coil 217 237 - -
Cme10g01249 344 Pfam bZIP transcription factor 142 196 IPR004827 GO:0003700|GO:0006355
Cme10g01249 344 SMART brlzneu 138 202 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g00331 Cme10g01249 CCT
Cme03g00331 Cme10g01249 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g01249 Cme-Chr10:13141141 Cme11g01450 Cme-Chr11:21461257 8.44E-113 dispersed
Cme12g00052 Cme-Chr12:526695 Cme10g01249 Cme-Chr10:13141141 6.79E-14 dispersed
Cme10g01249 Cme-Chr10:13141141 Cme01g00456 Cme-Chr1:3307587 3.29E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42100 PF00170 bZIP_1 1.70E-08 CL0018 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01249 - - csv:101209388 655.981