Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01254 ATGCGAGCATTTTTGAAGATGAAACGGCTGATTGAGTTATTCATCTTGTTCGTTTTGGCTCCACTTTGTGCTCGATGTGTAAACCTATCTTTAAACGGCGACGTTTTGGGTCTGATTGTGTTTAAAGCTGCTGTTCAAGATCCCAAGCTGAAACTCGCGAGTTGGAACGAAGATGACGATAGTCCCTGCAATTGGACTGGTGTTCAATGTAGTCCCAGATCCAAACGAGTCATCGAGCTCAACCTCAATGGCTTCTCTCTCTCTGGTCGGCTTGGCCGAGGGCTTTTCCAGTTGGAATTTCTGCAGAGATTATCGCTCTCCAATAACAATCTTAGTGGAAATATAAGCCCTAATTTTGCTCGAGTGGAGAATCTTCAGATGATTGATTTGAGTGGGAATAACTTCTCCGGTGCTGTTTCGGATGATTTTTTTCGTCAATGTAGGTCATTGAGAGTCATTTCTTTGGCTAACAACAATTTTTCTGGAAAAATTCCTGATAGTTTGAGCTTTTGTGGGAGTCTTATTTCAGTTAACTTTTCCTCAAATCGGTTTTCGGGTTCTTTGCCTTCTGGAATTTGGTCTATCAGTGGGCTTCGATCCTTGGACTTGTCTGATAATGCTCTGTCGGGTGAAATTCCAAAGGTAATTGAGAATTTGTATAATCTGCGGACTCTTAACTTGAGCAAGAATCGATTCTCTGGAGATATTCCTGATGGCATTGGGAGCTGTTTGCTTCTGAGGTCCATTGATCTTAGTGAGAATTCATTCTCTGGGAATCTTCCTCAGACCATGCAGAAACTTGTTTTGTGTAGTAATCTGATTTTAGGCAGGAATTTGTTTGATGGAGATATTCCAGAGTGGATAGGAGAAATGAAAAGCCTTGAAACTATTGACTTTTCAGGGAACAATTTTACTGGTCGTATTCCAGCTACAATGGAGAATCTTCAATATCTAAAAGTTTTGAATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCAGAATCTGTTATGAAGTGCCAAAGCCTTTTGGCATTAGATTTCAGTCATAATTTGATCATGGGTAATCTTCCTGAGATCGGAAGTTTACGCAAGCTGCAGATTCTGAGCCTGTCTGGGAATTATTTTGTTGGTTCAATTCCAGAAACTATTGGAGATTTGAAAGCTTTAAGCATTCTTGATTTGAGTGGAAATCAGTTGAACGAAACCATTCCTGTTGCAATTGGAGGAGCTGTGTCCCTAATTGAGCTGAAGCTGGATGGAAATTTTCTAGGGGGTGAAATTCCCTTTTCAATTGCTCATTGTTCTTCCCTTACAACTCTGTTCGCATCACACAATAACTTAACGGGCCCAATACCAGCAGCACTAGCTAAACTCTCTTATCTTCAAAATGTCGATTTATCCTTTAACAATCTCAATGGAACCCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCTTGTGTTCAATATATCTCACAACGACTTTAAGGGTGAGCTGCCAGGTGGTGGATTCTTTAACACAATCTCCCCTTCGTCCGTTACTGGCAATCCATCCCTTTGTGGCTCTGTTGTTAACAAGTCTTGCCCTTCTGTCCTTCCGAAACCTATTGTTCTTAATCCCAACTCGACATCAGATTCCATTTCCAGCTCACTGCCACCAAGTAATAATCACAAAAGAAATAGAAATATCCTCAGCATTTCTGCACTGGTTGCCATTGGTGCCGCTGCTTTCATAATCATTGGTGTAATCTCGATCACCATTCTCAACCTTCGCGTTCAATCACCCACGTCTTCTTCATCTGCAGCTGCACTTGCATTATCTGTTGGGGATGATTTCAGTAATTCCTCCAGTCCCGATGAGAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAACTTGACTTTAGCACAGGAGCTCATGCCTTACTGAACAAGGATTGTGAGCTTGGACGTGGTGGATTTGGAGCAGTTTACCATACTATTCTGCGGGACGGACACTCAGTTGCAATCAAGAAGCTTACAGTTTCTAGCCTTGTCAAGTCCCAAGAGGATTTCGAGAGGGAAGTTAGGAAGTTTGGTATTGTCAGGCACCAAAATCTCGTGGCACTTGAAGGTTATTATTGGACTCCCTCACTACAACTCCTTATATACGAATTTGTCTCCAGAGGTAGCTTGTATAGGTTACTCCATGAAGCGTCGGATGACAATGTCCTGTCATGGAATGAGAGGTTTGACATAATTCTTGGGGCAGCGAAAGGTCTTGCTCACTTACATCAATCAAACACAATCCACTATAACATAAAATCCAGCAACATTCTTATTGACTGTAATGGTCAACCTAAGGTGGGAGATTATGGTCTAGCTAGATTGCTGCCAATGTTAGACCGTTATGTTTTAAGTAGCAAGATCCAAAGTGCTCTCGGTTACATGGCACCCGAGTTTGCTTGCAGAACAGTAAAGATAACCGAAAAATGCGATGTGTATGGCTTCGGGATATTAATTCTAGAGGTGGTTACAGGGAAAAGACCTGTTGAGTACATGGAAGACGACGTTGCAGTCCTTAGCGACGTGGTCAGAGAAGCAGTGGAAGAAGGAAGAGCCGAAGAATGTGTCGACAGGAATCTGAGAGGGAGCTTTCCAATCGAAGAGGCTGTCCCAGTGTTAAAATTAGGCTTGATATGCACATCCCATGTGCCATCAAACCGACCCGACATGAGAGAAATGGTTAAGATATTGGAGATGATCAAATGTCCATCAGAATTACAAGAAGAATTGGGATAA 2778 42.08 MRAFLKMKRLIELFILFVLAPLCARCVNLSLNGDVLGLIVFKAAVQDPKLKLASWNEDDDSPCNWTGVQCSPRSKRVIELNLNGFSLSGRLGRGLFQLEFLQRLSLSNNNLSGNISPNFARVENLQMIDLSGNNFSGAVSDDFFRQCRSLRVISLANNNFSGKIPDSLSFCGSLISVNFSSNRFSGSLPSGIWSISGLRSLDLSDNALSGEIPKVIENLYNLRTLNLSKNRFSGDIPDGIGSCLLLRSIDLSENSFSGNLPQTMQKLVLCSNLILGRNLFDGDIPEWIGEMKSLETIDFSGNNFTGRIPATMENLQYLKVLNLSSNGFTDSFPESVMKCQSLLALDFSHNLIMGNLPEIGSLRKLQILSLSGNYFVGSIPETIGDLKALSILDLSGNQLNETIPVAIGGAVSLIELKLDGNFLGGEIPFSIAHCSSLTTLFASHNNLTGPIPAALAKLSYLQNVDLSFNNLNGTLPKQLSNLPNLLVFNISHNDFKGELPGGGFFNTISPSSVTGNPSLCGSVVNKSCPSVLPKPIVLNPNSTSDSISSSLPPSNNHKRNRNILSISALVAIGAAAFIIIGVISITILNLRVQSPTSSSSAAALALSVGDDFSNSSSPDENSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTILRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGIVRHQNLVALEGYYWTPSLQLLIYEFVSRGSLYRLLHEASDDNVLSWNERFDIILGAAKGLAHLHQSNTIHYNIKSSNILIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLSDVVREAVEEGRAEECVDRNLRGSFPIEEAVPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEELG 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13287124 13291332 - MELO3C020153.2.1 Cme10g01254 340140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01254 925 CDD STKc_IRAK 648 912 - -
Cme10g01254 925 Gene3D Ribonuclease Inhibitor 196 270 IPR032675 -
Cme10g01254 925 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cme10g01254 925 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g01254 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 358 916 - -
Cme10g01254 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 358 - -
Cme10g01254 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 358 916 - -
Cme10g01254 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 8 358 - -
Cme10g01254 925 SUPERFAMILY Protein kinase-like (PK-like) 645 918 IPR011009 -
Cme10g01254 925 SUPERFAMILY L domain-like 52 234 - -
Cme10g01254 925 Gene3D Ribonuclease Inhibitor 271 531 IPR032675 -
Cme10g01254 925 Pfam Protein tyrosine and serine/threonine kinase 644 910 IPR001245 GO:0004672|GO:0006468
Cme10g01254 925 SUPERFAMILY RNI-like 185 497 - -
Cme10g01254 925 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Cme10g01254 925 Pfam Leucine Rich repeat 316 330 IPR001611 GO:0005515
Cme10g01254 925 PRINTS Leucine-rich repeat signature 198 211 - -
Cme10g01254 925 PRINTS Leucine-rich repeat signature 386 399 - -
Cme10g01254 925 SMART LRR_typ_2 482 506 IPR003591 -
Cme10g01254 925 SMART LRR_typ_2 219 243 IPR003591 -
Cme10g01254 925 SMART LRR_typ_2 122 146 IPR003591 -
Cme10g01254 925 SMART LRR_typ_2 386 410 IPR003591 -
Cme10g01254 925 SMART LRR_typ_2 98 121 IPR003591 -
Cme10g01254 925 SMART LRR_typ_2 362 385 IPR003591 -
Cme10g01254 925 Gene3D Transferase(Phosphotransferase) domain 1 719 923 - -
Cme10g01254 925 Pfam Leucine rich repeat 363 421 IPR001611 GO:0005515
Cme10g01254 925 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515
Cme10g01254 925 Pfam Leucine rich repeat 124 183 IPR001611 GO:0005515
Cme10g01254 925 Gene3D Phosphorylase Kinase; domain 1 631 718 - -
Cme10g01254 925 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01012 Cme10g01254 CCT
Cme03g01012 Cme10g01254 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01012 Cme-Chr3:19216972 Cme10g01254 Cme-Chr10:13287124 0 dispersed
Cme04g02789 Cme-Chr4:32992323 Cme10g01254 Cme-Chr10:13287124 0 dispersed
Cme07g01878 Cme-Chr7:24153193 Cme10g01254 Cme-Chr10:13287124 0 dispersed
Cme10g01254 Cme-Chr10:13287124 Cme08g01607 Cme-Chr8:16561844 6.69E-125 dispersed
Cme10g01254 Cme-Chr10:13287124 Cme06g00412 Cme-Chr6:2644766 3.05E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65211 PF07714 PK_Tyr_Ser-Thr 4.20E-40 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01254 - - csv:101217762 1681.38