Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme10g01277 | GCCAATACGACTCGGCTTCCACGTGCCACTCCTTGCCCTTCCACTATTGCCTTCCATTTTCTCCGTTTTTCTTCTTCTTCTTTTCCCCTTCCCCAAATCCCACCGGCGACCCTCCGACCCATCTCCATCCGCCTCTTTTTCCGGCTGTCAAACTCCCATTTCTCCTTTTTCTCCTTTTCCTCTGGTGGGATTTCGAAGGGTCGATTCGGTAACCACGGGGAAGTTCGAAGGTTAGGGCTTTTCTTCACTTGGGCCTCTCTGAAAATGGAGACTTCCTCCTCCAATTCTGATCCTTACTCCAATTCTTCTTCACCCACAACTGCTCGTACCTCCTCCAGATTTGGCTTATCCCTCCCTTCTCTCAATTTCTTCCGTTCCCCTTTGTCTGTCATCTTGGATTACTCTGGAATTCTTCCCACTAGAGCTGTTCGTGATGAATCCGACCCTGTAATTAACGCTGCTGCTACTCCTGATTTGCGGGGTTTTTCTCAAAATCAGAATCACTTGATACCCACTTCTTCTTCTTCTTCTTCTGTTACAACTTCTTCCGCTAATACTATTCCTTCTGGGGAGGTTTCGATACGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCTAGTGCCTTGTTGCCAAATCAGGTTGGTTATGAGCAAAATGGTAGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCATTGGTGTCTACTGCTTCTTCGTCTATTCAATCTGGAGGCAGTCGTGTTGATGGAGAATCTGGAAATGGAATGGAAGAGAGTGTCAATAGAGATTCTTCTTACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAAATTCTTCCATTCTCTTTGCTATTGCTGATTGTCTTTATCCGTCAGCATTTAGAAGGGTTTTTCATCACAATTTGGATATCAGCTGTTATGTATAAGTCAAATGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAAAATTTCTGTCCTTGCTGGAACTTCCATTACGTTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGACGATCTTCTATACCCCTTAGTCATGCTTCCACCAAAGACTGTTCCTCCTTTTTGGCATGCCTTGTTCATCATTTTGGTCAACGATACAATGGTGAGGCAGTTTGCAATGGCTCTCAAATGTTTTCTTCTTATCTACTACAAGAATGGCAGAGGCCATAATTTTCGTCGGCAGGGTCAAATTTTAACTCTTGTGGAATACACTCTTCTATTGTACCGTGCATTATTACCAACACCTGTATGGTACCGATTCTTCTTGAATAAAGATCAAGGGAGCCTCTTTTCGTCATTGACAACAGGATTGTATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGATTCAATCATTTGTTGCTGCATTTAAGGCCCTATCACGAAAAGAAGTCCATTATGGATCATATGCCACTTCAGAACAGGTAAATGCTGCGGGAGATCTTTGTGCTATTTGCCAGGAGAAGATGAATGCTCCAATTCTATTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGAGCACTGGTAAAGCCTGCAGAACTCCGTACATTTGGTGATGGCTCGACCAGCTTACTCTTCCAATTGTTCTAG | 1701 | 43.62 | ANTTRLPRATPCPSTIAFHFLRFSSSSFPLPQIPPATLRPISIRLFFRLSNSHFSFFSFSSGGISKGRFGNHGEVRRLGLFFTWASLKMETSSSNSDPYSNSSSPTTARTSSRFGLSLPSLNFFRSPLSVILDYSGILPTRAVRDESDPVINAAATPDLRGFSQNQNHLIPTSSSSSSVTTSSANTIPSGEVSIRIIGSGEQDPSPSALLPNQVGYEQNGRLPVSGDQPESPDEERVPLVSTASSSIQSGGSRVDGESGNGMEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWISAVMYKSNDIVKKQTALKGERKISVLAGTSITFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMVRQFAMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF | 566 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 13660314 | 13666554 | + | MELO3C020174.2.1 | Cme10g01277 | 340163 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme10g01277 | 566 | CDD | RING-HC_RNFT1_like | 504 | 543 | - | - | |
Cme10g01277 | 566 | MobiDBLite | consensus disorder prediction | 91 | 111 | - | - | |
Cme10g01277 | 566 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 89 | 566 | - | - | |
Cme10g01277 | 566 | SMART | ring_2 | 505 | 542 | IPR001841 | - | |
Cme10g01277 | 566 | ProSitePatterns | Zinc finger RING-type signature. | 520 | 529 | IPR017907 | - | |
Cme10g01277 | 566 | Pfam | Zinc finger, C3HC4 type (RING finger) | 503 | 546 | - | - | |
Cme10g01277 | 566 | ProSiteProfiles | Zinc finger RING-type profile. | 505 | 543 | IPR001841 | - | |
Cme10g01277 | 566 | SUPERFAMILY | RING/U-box | 499 | 548 | - | - | |
Cme10g01277 | 566 | MobiDBLite | consensus disorder prediction | 159 | 186 | - | - | |
Cme10g01277 | 566 | MobiDBLite | consensus disorder prediction | 238 | 255 | - | - | |
Cme10g01277 | 566 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 479 | 552 | IPR013083 | - | |
Cme10g01277 | 566 | MobiDBLite | consensus disorder prediction | 218 | 267 | - | - | |
Cme10g01277 | 566 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 89 | 566 | IPR044235 | GO:0061630|GO:1904294 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g01737 | Cme-Chr5:26394592 | Cme10g01277 | Cme-Chr10:13660314 | 9.85E-12 | dispersed | |
Cme08g02066 | Cme-Chr8:26064667 | Cme10g01277 | Cme-Chr10:13660314 | 0 | dispersed | |
Cme10g01277 | Cme-Chr10:13660314 | Cme02g01395 | Cme-Chr2:20147263 | 1.41E-06 | dispersed | |
Cme10g01277 | Cme-Chr10:13660314 | Cme08g00502 | Cme-Chr8:3101352 | 3.22E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme10g01277 | - | K22379 | csv:101207430 | 893.649 |