Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01277 GCCAATACGACTCGGCTTCCACGTGCCACTCCTTGCCCTTCCACTATTGCCTTCCATTTTCTCCGTTTTTCTTCTTCTTCTTTTCCCCTTCCCCAAATCCCACCGGCGACCCTCCGACCCATCTCCATCCGCCTCTTTTTCCGGCTGTCAAACTCCCATTTCTCCTTTTTCTCCTTTTCCTCTGGTGGGATTTCGAAGGGTCGATTCGGTAACCACGGGGAAGTTCGAAGGTTAGGGCTTTTCTTCACTTGGGCCTCTCTGAAAATGGAGACTTCCTCCTCCAATTCTGATCCTTACTCCAATTCTTCTTCACCCACAACTGCTCGTACCTCCTCCAGATTTGGCTTATCCCTCCCTTCTCTCAATTTCTTCCGTTCCCCTTTGTCTGTCATCTTGGATTACTCTGGAATTCTTCCCACTAGAGCTGTTCGTGATGAATCCGACCCTGTAATTAACGCTGCTGCTACTCCTGATTTGCGGGGTTTTTCTCAAAATCAGAATCACTTGATACCCACTTCTTCTTCTTCTTCTTCTGTTACAACTTCTTCCGCTAATACTATTCCTTCTGGGGAGGTTTCGATACGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCTAGTGCCTTGTTGCCAAATCAGGTTGGTTATGAGCAAAATGGTAGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCATTGGTGTCTACTGCTTCTTCGTCTATTCAATCTGGAGGCAGTCGTGTTGATGGAGAATCTGGAAATGGAATGGAAGAGAGTGTCAATAGAGATTCTTCTTACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAAATTCTTCCATTCTCTTTGCTATTGCTGATTGTCTTTATCCGTCAGCATTTAGAAGGGTTTTTCATCACAATTTGGATATCAGCTGTTATGTATAAGTCAAATGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAAAATTTCTGTCCTTGCTGGAACTTCCATTACGTTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGACGATCTTCTATACCCCTTAGTCATGCTTCCACCAAAGACTGTTCCTCCTTTTTGGCATGCCTTGTTCATCATTTTGGTCAACGATACAATGGTGAGGCAGTTTGCAATGGCTCTCAAATGTTTTCTTCTTATCTACTACAAGAATGGCAGAGGCCATAATTTTCGTCGGCAGGGTCAAATTTTAACTCTTGTGGAATACACTCTTCTATTGTACCGTGCATTATTACCAACACCTGTATGGTACCGATTCTTCTTGAATAAAGATCAAGGGAGCCTCTTTTCGTCATTGACAACAGGATTGTATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGATTCAATCATTTGTTGCTGCATTTAAGGCCCTATCACGAAAAGAAGTCCATTATGGATCATATGCCACTTCAGAACAGGTAAATGCTGCGGGAGATCTTTGTGCTATTTGCCAGGAGAAGATGAATGCTCCAATTCTATTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGAGCACTGGTAAAGCCTGCAGAACTCCGTACATTTGGTGATGGCTCGACCAGCTTACTCTTCCAATTGTTCTAG 1701 43.62 ANTTRLPRATPCPSTIAFHFLRFSSSSFPLPQIPPATLRPISIRLFFRLSNSHFSFFSFSSGGISKGRFGNHGEVRRLGLFFTWASLKMETSSSNSDPYSNSSSPTTARTSSRFGLSLPSLNFFRSPLSVILDYSGILPTRAVRDESDPVINAAATPDLRGFSQNQNHLIPTSSSSSSVTTSSANTIPSGEVSIRIIGSGEQDPSPSALLPNQVGYEQNGRLPVSGDQPESPDEERVPLVSTASSSIQSGGSRVDGESGNGMEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWISAVMYKSNDIVKKQTALKGERKISVLAGTSITFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMVRQFAMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13660314 13666554 + MELO3C020174.2.1 Cme10g01277 340163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01277 566 CDD RING-HC_RNFT1_like 504 543 - -
Cme10g01277 566 MobiDBLite consensus disorder prediction 91 111 - -
Cme10g01277 566 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 89 566 - -
Cme10g01277 566 SMART ring_2 505 542 IPR001841 -
Cme10g01277 566 ProSitePatterns Zinc finger RING-type signature. 520 529 IPR017907 -
Cme10g01277 566 Pfam Zinc finger, C3HC4 type (RING finger) 503 546 - -
Cme10g01277 566 ProSiteProfiles Zinc finger RING-type profile. 505 543 IPR001841 -
Cme10g01277 566 SUPERFAMILY RING/U-box 499 548 - -
Cme10g01277 566 MobiDBLite consensus disorder prediction 159 186 - -
Cme10g01277 566 MobiDBLite consensus disorder prediction 238 255 - -
Cme10g01277 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 552 IPR013083 -
Cme10g01277 566 MobiDBLite consensus disorder prediction 218 267 - -
Cme10g01277 566 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 89 566 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01737 Cme-Chr5:26394592 Cme10g01277 Cme-Chr10:13660314 9.85E-12 dispersed
Cme08g02066 Cme-Chr8:26064667 Cme10g01277 Cme-Chr10:13660314 0 dispersed
Cme10g01277 Cme-Chr10:13660314 Cme02g01395 Cme-Chr2:20147263 1.41E-06 dispersed
Cme10g01277 Cme-Chr10:13660314 Cme08g00502 Cme-Chr8:3101352 3.22E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01277 - K22379 csv:101207430 893.649