Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01289 ATGGGCTGCATTTGCTCTAAGGGAATTCCAGCAAACGACTATGTTGCTGAGAATCATTGCAAAGAGAGGCATTTGAAGTCTAATAGATCTTCCAGACATGGGACTTCATTGAGGAAAGAAGAATCCGTGTTACATTCTGATGGAGGGCAAAGTGATGCAATGGCGCGATTGATACTGAATCAACCTGGGGAAGAGAATGCTGGATCAACAACGGAATCAGATGGTGCTGAGAAGGTAACATCCATTGGAAAAGTTGGCAGTGCCAAGCCCCTGCGTCAAGAACGGCCAACTATGGAGGATGGAATAAAGAGAGTAGGAGTACATAATAACAATGCAACACCTAGAATAATCGGCGTTGTAATTGGGGAAAAGGGGGCTTTGGTTATTGCTGGATGGCCTTCTTGGCTGACATCTGTGGCTGGAGAAGCAATCAATGGATGGGTTCCTAGAAAGGCAGACTCTTTTCAGAAGTTGGATAAGATTGGACAAGGAACGTACAGCAGTGTGTACAGGGCCCGTGACATTGAAACAAACAAGATTGTTGCATTGAAGAAGGTGCGATTTGCTAACATGGATCCTGAAAGTGTTCGTTTTATGGCCAGGGAAATTCTTATCCTGCGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATTACTTCAAGGGTGTCAGGCAGTTTATACCTCATATTTGAGTACATGGAACATGATCTTGCAGGGTTGGTAGCTACCTCAGGGATCAAGTTCACTGAAGCACAGATAAAATGCTATATGAAGCAACTGCTTTCTGGCCTTGAACATTGCCATGCACAGGGAGTTTTGCACCGTGACATCAAGGGTTCAAATCTTCTGATTGACAATGATGGTAATTTAAAGATAGGTGATTTTGGGCTATCAACCTTTTTCCGTCCCCGACAAAAGCAGCCTCTTACAAGTCGTGTGGTAACTTTGTGGTATCGGCCACCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGTGCTGGCTGCATTCTGGCAGAACTATATGCTGGAAAGCCTATCATGCCTGGAAGAACAGAGGTGGAGCAACTACATAAGATCTTCAAACTCTGTGGCTCCCCGTCTGAAGAATACTGGAAAAAGTCAAAATTACCTCATGCCACCATTTTTAAACCTCAACATCCTTACAAGCGGTGTGTTGCTGAGACATTCAAAGACTTCCCTTTTTCTGCATTGGCCCTTTTGGATGTCCTTCTTGCCGTAGAACCTGATGGCCGTGGAACAGCATCCTCTGCCCTTCGAAGTGAGTTCTTTACCACCAAACCGCTTCCCTCAGATCCCTCTGATTTGCCAAAGTACCCACCATGCAAGGAGTTTGATGTGAAACTTCGAGATGAGGAAGCTCGAAGAAGAAGAGCTCCTATCAGTGTTGCACGTGAGCATGAAGCAGCTTATAAGTTTCCCCGAGAGTCGAAAGCAATTCCTGCACCACATGCAAATGCTGAATTGCATGCATCCATACAGAAGAAACAAGTGCAGCAGAATCCTACAAGTGTCAGTGAAAAGTATAATCACGAAGAGGACGGTGGCTCAGGCTTTTGCATTGAGCCACGCAAAGAAGCAATGCAAATGCAACCAACTGGATTAGGTTCTTCACAAAACATGAATGGGAATCAGGGTGATAATCAAAGAGGTTCTTCAGTTGGAGCAAAAGGTGCAGAACTTAGAAAACAGCGGTCTTTTATGCAGCATGGTGCTGGACAGTTATCTCGGTATTCCAATTCTGTTGCAGTTCGAGGTGGTTCACGATTTGACTGTGGTGGAGAAAGTAGTGCTAATTCACACTGGCCAGAAGAGTGTTTTAATGTGTCATATAACCATTTCAATGGTGGGGAATCTTCAGAAAAGCATGAATGGTCTCGCCATTTACTTGGCAGGCCAAAATCTTCATATAAGATGGATGATCAGTCATCTGGAAAAGAGTCTATGTCTTATGCTCCGAAGAAGAGAATTCACTACTCAGGACCATTGATGCCTCCTGGTGGTAACCTTGAGGAAATGTTAAAAGAGCACGAGAAACAAATCCAACATGCAGTGCGCAAGGCTCGTATTGACAAAGCTAAGACAAAAAAGACGCATGACGACAAAGGTCAAATGGAAGCATTGCTTTACCATATGAGAAACGGAAATTGA 2196 44.4 MGCICSKGIPANDYVAENHCKERHLKSNRSSRHGTSLRKEESVLHSDGGQSDAMARLILNQPGEENAGSTTESDGAEKVTSIGKVGSAKPLRQERPTMEDGIKRVGVHNNNATPRIIGVVIGEKGALVIAGWPSWLTSVAGEAINGWVPRKADSFQKLDKIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLVATSGIKFTEAQIKCYMKQLLSGLEHCHAQGVLHRDIKGSNLLIDNDGNLKIGDFGLSTFFRPRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSAGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCVAETFKDFPFSALALLDVLLAVEPDGRGTASSALRSEFFTTKPLPSDPSDLPKYPPCKEFDVKLRDEEARRRRAPISVAREHEAAYKFPRESKAIPAPHANAELHASIQKKQVQQNPTSVSEKYNHEEDGGSGFCIEPRKEAMQMQPTGLGSSQNMNGNQGDNQRGSSVGAKGAELRKQRSFMQHGAGQLSRYSNSVAVRGGSRFDCGGESSANSHWPEECFNVSYNHFNGGESSEKHEWSRHLLGRPKSSYKMDDQSSGKESMSYAPKKRIHYSGPLMPPGGNLEEMLKEHEKQIQHAVRKARIDKAKTKKTHDDKGQMEALLYHMRNGN 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13887860 13905327 + MELO3C020186.2.1 Cme10g01289 340175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01289 731 Pfam Protein kinase domain 155 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g01289 731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Cme10g01289 731 CDD STKc_CDK9_like 155 439 - -
Cme10g01289 731 MobiDBLite consensus disorder prediction 64 101 - -
Cme10g01289 731 MobiDBLite consensus disorder prediction 508 573 - -
Cme10g01289 731 Gene3D Transferase(Phosphotransferase) domain 1 238 478 - -
Cme10g01289 731 MobiDBLite consensus disorder prediction 25 50 - -
Cme10g01289 731 ProSitePatterns Protein kinases ATP-binding region signature. 161 184 IPR017441 GO:0005524
Cme10g01289 731 PANTHER CELL DIVISION PROTEIN KINASE 86 712 - -
Cme10g01289 731 MobiDBLite consensus disorder prediction 546 567 - -
Cme10g01289 731 SMART serkin_6 155 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g01289 731 PANTHER BNACNNG19830D PROTEIN 86 712 - -
Cme10g01289 731 Gene3D Phosphorylase Kinase; domain 1 142 237 - -
Cme10g01289 731 SUPERFAMILY Protein kinase-like (PK-like) 149 446 IPR011009 -
Cme10g01289 731 ProSiteProfiles Protein kinase domain profile. 155 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g01289 731 Coils Coil 682 702 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01588 Cme-Chr1:21206055 Cme10g01289 Cme-Chr10:13887860 9.15E-21 dispersed
Cme09g00045 Cme-Chr9:330932 Cme10g01289 Cme-Chr10:13887860 4.72E-16 dispersed
Cme10g01289 Cme-Chr10:13887860 Cme12g01566 Cme-Chr12:23051938 0 dispersed
Cme10g01289 Cme-Chr10:13887860 Cme05g01749 Cme-Chr5:26533664 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65212 PF00069 Pkinase 4.10E-68 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01289 - - csv:101214435 1411.74