Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme10g01333 | ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGTCAGATGAGAGGTCAGCAGCCACCGCAACCACAACCGCCGCCGCCGTCAGCTCCCTCTAATTCATCCACTGCTCTTCCAACTCCTCCTCCCCAGAAGAAAAAGAGAAACCAACCAGGAACTCCAAATCCAGATGCAGAAGTGATAGCGTTAAGTCCAAAGACATTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAACTACATAGAAGAGGACATAATTTACCATGGAAATTAAAGCAGAAAAGCACAAAAGAACCAAAAAGAAAAGTGTATTTATGCCCAGAACCAACATGCGTTCACCATGACCCGTCAAGAGCACTTGGGGATTTAACAGGTATCAAGAAACACTACTCACGAAAGCACGGAGAAAAGAAGTGGAAGTGCGATAAATGCTCTAAACGTTACGCCGTTCAATCCGACTGGAAAGCACATTCCAAAACCTGTGGCACTAGAGAATATCGTTGCGATTGTGGCACTCTCTTCTCCAGAAGGGACAGTTTCATTACACATAGAGCGTTTTGTGATGCATTGGCACAAGAAAGTGCAAGACACCCTCCAAATTTGGGGACAGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACGTTATCACAAGTCCCTCAACTCTCTTCTCTTCAAGACCATTCCAACATCACCCAATCACCGCACGACGTCCTTCGTCTTGGCGGCGGTCGAACCGGGCAATTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCACCGCAACAAGCAATGCCATCATCCAATGCGGCCTTCTTCGGCCTGTCGGACCAAACTAACCAAAATAGCTTCCATGAAGATCATCATCAAAGCCAATCCCAGCAAGGGTTGTTCGGAAACAAGCCTTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAATAACAACAGCAATTCTGCTTCAAATCTCTTCAATTTGAGCTTCATTTCAAATCCCACTGGTGATAATACTTCCAATATGAACAATAACAATGACACCAACACTAACAATAGCAACAGCAGTAGCAACAACAACAACAATCTTCCATCCTCTTTGTTAAACCAATTCAACGGAACGAACAATGGCAACAACGACGGTCCTGCGTCTAACATTTTTGCTGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTCCCCTCGCTCTACAGCAACACCGCCCCGGGAGGATGTAGTAGCGGTACAAGCGGAGGAGGAGCAATCCCACATATGTCCGCAACAGCACTGCTACAAAAAGCAGCACAATTAGGCTCAACAACGTCAAGTAGCAATACTACAGCGACATTGCTACGCACATTTGGAAGCTCCTCGACCTCAAGCGGAAAGGCATCAGATAGAACGCTCTTCCCACCAAGTTATGGCGGAGTAGTATTCAGTGAAAACGAGAGTAATCTCCAAGACCTGATGAACTCATTCGCAAACGCGAGCTCAGGGAGCGGGATGTTCGGGTCGTTTGGGGTGGAAAGCTTAGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTATGGGAGGTGGGACAGATAGGTTAACAAGAGACTTCTTAGGGGTGGGACAAATCGTAAGAAGTATGAGCGGAGGTGGTGGCGGTGGCGGTTATTCACAGAGAGAACACAAACAAGGGGGGCAAGGGATAGTTATGGAGGGTAATGAGAGCAATACGGCGCCGTCAAGCAATGCGTTTGGTGGTGGAAATGGAAACTACCAGTGA | 1857 | 46.31 | MAASSSSVPLFGVREEGQMRGQQPPQPQPPPPSAPSNSSTALPTPPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGTAIGSHLYGGNSNVGLTLSQVPQLSSLQDHSNITQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAAFFGLSDQTNQNSFHEDHHQSQSQQGLFGNKPFHGLMQFPSDIQTHANNNSNSASNLFNLSFISNPTGDNTSNMNNNNDTNTNNSNSSSNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSNTAPGGCSSGTSGGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSTSSGKASDRTLFPPSYGGVVFSENESNLQDLMNSFANASSGSGMFGSFGVESLEDPTKLQQNLSTVSMGGGTDRLTRDFLGVGQIVRSMSGGGGGGGYSQREHKQGGQGIVMEGNESNTAPSSNAFGGGNGNYQ | 618 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 15114723 | 15119464 | - | MELO3C022568.2.1 | Cme10g01333 | 340219 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme10g01333 | 618 | MobiDBLite | consensus disorder prediction | 361 | 404 | - | - | |
Cme10g01333 | 618 | MobiDBLite | consensus disorder prediction | 23 | 53 | - | - | |
Cme10g01333 | 618 | Gene3D | Classic Zinc Finger | 132 | 211 | - | - | |
Cme10g01333 | 618 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 340 | 585 | - | - | |
Cme10g01333 | 618 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 1 | 335 | - | - | |
Cme10g01333 | 618 | MobiDBLite | consensus disorder prediction | 595 | 618 | - | - | |
Cme10g01333 | 618 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 335 | - | - | |
Cme10g01333 | 618 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 340 | 585 | - | - | |
Cme10g01333 | 618 | MobiDBLite | consensus disorder prediction | 574 | 618 | - | - | |
Cme10g01333 | 618 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 174 | IPR036236 | - | |
Cme10g01333 | 618 | Pfam | Zinc-finger double-stranded RNA-binding | 78 | 100 | IPR022755 | - | |
Cme10g01333 | 618 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 80 | 100 | IPR013087 | - | |
Cme10g01333 | 618 | MobiDBLite | consensus disorder prediction | 281 | 328 | - | - | |
Cme10g01333 | 618 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Cme10g01333 | 618 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 78 | 100 | IPR013087 | - | |
Cme10g01333 | 618 | MobiDBLite | consensus disorder prediction | 281 | 322 | - | - | |
Cme10g01333 | 618 | Gene3D | Classic Zinc Finger | 57 | 126 | - | - | |
Cme10g01333 | 618 | SMART | c2h2final6 | 119 | 149 | IPR013087 | - | |
Cme10g01333 | 618 | SMART | c2h2final6 | 154 | 174 | IPR013087 | - | |
Cme10g01333 | 618 | SMART | c2h2final6 | 78 | 100 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme10g01333 | Cme-Chr10:15114723 | Cme11g00875 | Cme-Chr11:11738322 | 3.30E-108 | dispersed | |
Cme10g01333 | Cme-Chr10:15114723 | Cme04g02537 | Cme-Chr4:31606721 | 4.93E-110 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42104 | PF12171 | zf-C2H2_jaz | 3.80E-05 | CL0361 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme10g01333 | K25870 | - | csv:116401647 | 1094.34 |