Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01333 ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGTCAGATGAGAGGTCAGCAGCCACCGCAACCACAACCGCCGCCGCCGTCAGCTCCCTCTAATTCATCCACTGCTCTTCCAACTCCTCCTCCCCAGAAGAAAAAGAGAAACCAACCAGGAACTCCAAATCCAGATGCAGAAGTGATAGCGTTAAGTCCAAAGACATTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAACTACATAGAAGAGGACATAATTTACCATGGAAATTAAAGCAGAAAAGCACAAAAGAACCAAAAAGAAAAGTGTATTTATGCCCAGAACCAACATGCGTTCACCATGACCCGTCAAGAGCACTTGGGGATTTAACAGGTATCAAGAAACACTACTCACGAAAGCACGGAGAAAAGAAGTGGAAGTGCGATAAATGCTCTAAACGTTACGCCGTTCAATCCGACTGGAAAGCACATTCCAAAACCTGTGGCACTAGAGAATATCGTTGCGATTGTGGCACTCTCTTCTCCAGAAGGGACAGTTTCATTACACATAGAGCGTTTTGTGATGCATTGGCACAAGAAAGTGCAAGACACCCTCCAAATTTGGGGACAGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACGTTATCACAAGTCCCTCAACTCTCTTCTCTTCAAGACCATTCCAACATCACCCAATCACCGCACGACGTCCTTCGTCTTGGCGGCGGTCGAACCGGGCAATTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCACCGCAACAAGCAATGCCATCATCCAATGCGGCCTTCTTCGGCCTGTCGGACCAAACTAACCAAAATAGCTTCCATGAAGATCATCATCAAAGCCAATCCCAGCAAGGGTTGTTCGGAAACAAGCCTTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAATAACAACAGCAATTCTGCTTCAAATCTCTTCAATTTGAGCTTCATTTCAAATCCCACTGGTGATAATACTTCCAATATGAACAATAACAATGACACCAACACTAACAATAGCAACAGCAGTAGCAACAACAACAACAATCTTCCATCCTCTTTGTTAAACCAATTCAACGGAACGAACAATGGCAACAACGACGGTCCTGCGTCTAACATTTTTGCTGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTCCCCTCGCTCTACAGCAACACCGCCCCGGGAGGATGTAGTAGCGGTACAAGCGGAGGAGGAGCAATCCCACATATGTCCGCAACAGCACTGCTACAAAAAGCAGCACAATTAGGCTCAACAACGTCAAGTAGCAATACTACAGCGACATTGCTACGCACATTTGGAAGCTCCTCGACCTCAAGCGGAAAGGCATCAGATAGAACGCTCTTCCCACCAAGTTATGGCGGAGTAGTATTCAGTGAAAACGAGAGTAATCTCCAAGACCTGATGAACTCATTCGCAAACGCGAGCTCAGGGAGCGGGATGTTCGGGTCGTTTGGGGTGGAAAGCTTAGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTATGGGAGGTGGGACAGATAGGTTAACAAGAGACTTCTTAGGGGTGGGACAAATCGTAAGAAGTATGAGCGGAGGTGGTGGCGGTGGCGGTTATTCACAGAGAGAACACAAACAAGGGGGGCAAGGGATAGTTATGGAGGGTAATGAGAGCAATACGGCGCCGTCAAGCAATGCGTTTGGTGGTGGAAATGGAAACTACCAGTGA 1857 46.31 MAASSSSVPLFGVREEGQMRGQQPPQPQPPPPSAPSNSSTALPTPPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGTAIGSHLYGGNSNVGLTLSQVPQLSSLQDHSNITQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAAFFGLSDQTNQNSFHEDHHQSQSQQGLFGNKPFHGLMQFPSDIQTHANNNSNSASNLFNLSFISNPTGDNTSNMNNNNDTNTNNSNSSSNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSNTAPGGCSSGTSGGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSTSSGKASDRTLFPPSYGGVVFSENESNLQDLMNSFANASSGSGMFGSFGVESLEDPTKLQQNLSTVSMGGGTDRLTRDFLGVGQIVRSMSGGGGGGGYSQREHKQGGQGIVMEGNESNTAPSSNAFGGGNGNYQ 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15114723 15119464 - MELO3C022568.2.1 Cme10g01333 340219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01333 618 MobiDBLite consensus disorder prediction 361 404 - -
Cme10g01333 618 MobiDBLite consensus disorder prediction 23 53 - -
Cme10g01333 618 Gene3D Classic Zinc Finger 132 211 - -
Cme10g01333 618 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 340 585 - -
Cme10g01333 618 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 335 - -
Cme10g01333 618 MobiDBLite consensus disorder prediction 595 618 - -
Cme10g01333 618 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 335 - -
Cme10g01333 618 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 340 585 - -
Cme10g01333 618 MobiDBLite consensus disorder prediction 574 618 - -
Cme10g01333 618 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Cme10g01333 618 Pfam Zinc-finger double-stranded RNA-binding 78 100 IPR022755 -
Cme10g01333 618 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Cme10g01333 618 MobiDBLite consensus disorder prediction 281 328 - -
Cme10g01333 618 MobiDBLite consensus disorder prediction 1 63 - -
Cme10g01333 618 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Cme10g01333 618 MobiDBLite consensus disorder prediction 281 322 - -
Cme10g01333 618 Gene3D Classic Zinc Finger 57 126 - -
Cme10g01333 618 SMART c2h2final6 119 149 IPR013087 -
Cme10g01333 618 SMART c2h2final6 154 174 IPR013087 -
Cme10g01333 618 SMART c2h2final6 78 100 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g01333 Cme-Chr10:15114723 Cme11g00875 Cme-Chr11:11738322 3.30E-108 dispersed
Cme10g01333 Cme-Chr10:15114723 Cme04g02537 Cme-Chr4:31606721 4.93E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42104 PF12171 zf-C2H2_jaz 3.80E-05 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01333 K25870 - csv:116401647 1094.34