Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01341 ATGGCAGAGGAGTGCACTGAGAGCTCTGTTGCTACCTCTAATTCAACTCCATCAAACTGGTGGGATATTAATCATAATCACAATCACCATCACCATCACCATCCTTCACTTTCTTATAATTCTCATTGGCTTCTCCCAAACCCTAATTCCAACTCCTCTTGTGAAGAAGATGTTTCCATCTCTACTTCTTCCTTTACCAACCACCTTCTTCCTCACCATCCTTCTGATAATAACCACCTTTGGACTCAAGTCTTGCTGAACATAGGAAATGATGTAGAATTACAAAGCAACGAAGAAGACATAGAAGGGAATTTCCTAGAGACAATATCATCAAGATCAAGCATGTCCACCACCGGAATCTTCGAACCCACCGCATGTAGCGATTACCTTAAAAAAATGGACACGTCAAACAACAATAACAACAATTGGGACGATACTTTCCAAACCTTCAACACCAACACCAACAACAATAACAGACTTCTTACGTCGTCCCAGGCTCACATGCTCCAAAACGAAAGGTTCTTGAAGCTTTCAAATCTCGTCAACAGGTGGTCCATTGCCCTCCCGAGCCCAGACCCACATCTACGACACTTGACCGATGACCAACACGACCATCTTCGAGCTACCACTGTACCAACTCATGAAATACTTGAGTCAGCTGATGGCGTCGTTCCTCACCAAGGACTAGACCCATGTGACTCGAGCTTCCTTAGGAGGACGCTTCAAAATCAAAATTACGGTGACTATATTTCTTTTAACGGACGGCTGGCTAAACCGATGGTCGGTATCAATAGTTCGAGTAATAATCCTTGTTTTAAGTCATCATTGAATTTGTCTGCTGATAGTAAGAAACAGATTCACCAAATTTGTTCGCCGACAAGAATTAGTGGAAGAGGAAGTGGAGGAGTTTCGAACGAAGGGAAGAAGAAAAGATCCGAAGAATCTTCATCTGAAACTTCAACCAAAAAGGCTAAGCAAGATAACTCAACACCTTATTCCAATAAGATGCAACAACCAAAGGTCAAAATTGGAGACAGGATAACGGCCCTTCAGCAAATTGTGTCGCCATTTGGAAAGGTCTATCGAACATTTTTCGTTTTCGAAATTACTGATACGGCGTCGGTTCTAACCGAAACCATTGGATACATAAAGTTCCTACAAGAGCAAGTCCAGCTACTGAGCAATCCTTACATGAAGACCAATTCCTATAAGGATCCATGGCAAAGTTTGGAGAGAAAAGAAGGGAAAGGAGATGGAAAAATTGACCTAAGGAGCAGAGGTCTTTGTTTAGTTCCAATTTCATGTACTCCTCAAGTCTATAGAGAGAACACAGGATCCGACTACTGGACACCTTACAGAGGTTGTTTCTATAGATAG 1377 42.19 MAEECTESSVATSNSTPSNWWDINHNHNHHHHHHPSLSYNSHWLLPNPNSNSSCEEDVSISTSSFTNHLLPHHPSDNNHLWTQVLLNIGNDVELQSNEEDIEGNFLETISSRSSMSTTGIFEPTACSDYLKKMDTSNNNNNNWDDTFQTFNTNTNNNNRLLTSSQAHMLQNERFLKLSNLVNRWSIALPSPDPHLRHLTDDQHDHLRATTVPTHEILESADGVVPHQGLDPCDSSFLRRTLQNQNYGDYISFNGRLAKPMVGINSSSNNPCFKSSLNLSADSKKQIHQICSPTRISGRGSGGVSNEGKKKRSEESSSETSTKKAKQDNSTPYSNKMQQPKVKIGDRITALQQIVSPFGKVYRTFFVFEITDTASVLTETIGYIKFLQEQVQLLSNPYMKTNSYKDPWQSLERKEGKGDGKIDLRSRGLCLVPISCTPQVYRENTGSDYWTPYRGCFYR 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15349540 15355587 - MELO3C022574.2.1 Cme10g01341 340227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01341 458 PANTHER TRANSCRIPTION FACTOR BHLH111 43 445 - -
Cme10g01341 458 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 43 445 - -
Cme10g01341 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 403 IPR036638 GO:0046983
Cme10g01341 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 386 IPR011598 GO:0046983
Cme10g01341 458 CDD bHLH_AtbHLH_like 337 394 IPR045239 -
Cme10g01341 458 MobiDBLite consensus disorder prediction 290 340 - -
Cme10g01341 458 MobiDBLite consensus disorder prediction 304 321 - -
Cme10g01341 458 MobiDBLite consensus disorder prediction 322 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01341 - - - csv:116403687 768.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02003 Cme-Chr6:24576276 Cme10g01341 Cme-Chr10:15349540 1.94E-31 dispersed
Cme10g01341 Cme-Chr10:15349540 Cme04g00527 Cme-Chr4:4501055 8.67E-23 dispersed
Cme10g01341 Cme-Chr10:15349540 Cme08g00357 Cme-Chr8:2256998 2.12E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1105 . . . . . . . . Cmo04g01049 . Cma04g00972 . Car04g00914 . . . . . . . . . . . . . . . . . . . . . . . . Chy10g00019 Cme10g01341 . . . . Bpe11g01724 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00946 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012297 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 29