Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01362 ATGGTAGGAGGCGGGCCTCAAGTTCTTGAACAACCACCGCAGTCTTTACCTCAATCCACATCTGCTGCTGAAGAGGAGGCTGTTAAGAGAAATACAGACTGTGTTTACTTTCTTGCTTCCCCTTTGACTTGTAAAAAGGGAAGTGAATGTGAGTATCGCCACAGTGAATATGCCCGGGTCAATCCTAGGGATTGCTGGTTCTGGTTGAATGGTAACTGCTTGAATCCAAAATGTTCATTCCGACATCCACCTTTGGATGGCTTGGTAGGAACTCCTCATTCAACAACTCCGAGTTCTCAGATTCCTTCTCAAACTTCATCAATTCCTTCTGCTCCTGTCAACTCGAGTAAACAAGCAGTCCCCTGCATTTTTTTCCAGAAGGGTCTATGTCTGAAAGGAGATCGATGTGCATTCTTGCATGGTCCTCCTCCAGTTCAAACGAACAAAGTGCCTCAGATGGGATCAAATGCCCAAGCTGGCGAGCCACCAAGTGTCAAGAAAGTTTCTGGTGGTACCCAAAGGAACAGTCAAGAGCAGAAGATCCCTCAAGCTAATTTTTCGAAGTCAATTGGTGGTTCATCTATTAAACTTGCAATGAAAGATGAAACCGTGCCGTCAAAGATTGGAAAACTCAATGAGAAGAGCATACCACCTGCAGAAATGGCTGATGGTGGTTCAAGGTACAAGAGTACAAATGCTCTTCCAACTATAAATGAGTGTTTACTAAGTAGAGCCAATCGACTGCAACAAAGTCATGTAATAGATGATCATGGGTTACAGAATGGTAAGGATGCTGATGAGTTTTTGAAGGAGTCGTCTCCAGGTTTTGATGTTCTTGTCGATGATGAGCTGAGAGGCTCTGGTTATTATGGCAGTGAAGAACAGTATGGGAGATCAAGAGGTCATGAGGGAGGAAATATGACTTCTATGAATGATTATGACATCGGTCATTCTGCTGATTATAAAATGATGGGTGATGTTGATCATGATGTTTATAATGACGTAACAGACTTTGACTATGAAAGTAGACAAGGGGGACAGTATGGTTGGGACCATCGTAGGACCTCGTCTGATAAGCTGTCTTTAAGCTCTGCCCAGATGGAAAGGAGGCTCTTCCCAAAATCTAACAGTCCAGAACATGTTCAGAATGTGGATTTACGTCACCGTTTAAACAAGCAGAGAAGGGGAAATGGTTTGAGATCTGTGATCAATAATGAAAATGCTGCTAGTCGCCCAGAAGAACGGAATTATCGCTCTTCTAGGAGAGATTCTCACTCCTCTCAAGAAAGCACTGTGAGTAACCGTCTCCGAGGTAGGATAAAGCTTCCAAGGATACCGTCACCAGTTAGGAGTAGTAATATACGGCCAGAAAGAGATTTGAACCGGGGAAGACCCTGGGGAAGATCGTCACCAGGGAGGTCACAGTCCTTGTCTAATCAGGGAAGCAATAGAGATGAAATAAAAGGCAGACTGGAAGAAGATTATAACAATGAGCGTAGAACTTTTAATGGTTTTAATTCTAGAAGAGAGAGAATGGATGGAACCTCTGACTTCGCTGCTCCAAAAAGTCTGGCTGAGCTGAAAGGCGATAAGCACATGGTTATGAAGGAGCAGCAAACCCTTGGCAAAAGAAAAGGCTTCGATATAGAACAATCCGGAGGCGAACTGTCATTTGAAGGACCGAAGCCTCTGAGTGAGATTCTAAAAAGGAAGAGACAAGTTAAAGCTGTTGTTGATCTTCCTATAAATAATGCTGAAAGAGAAAACAGTGAAAGATCAATGGAACGCTCCACTACTCACCCCTTGAAGCAAAGTGTCCTATCATCGACGGGCAAGGACGAAACAAATAGCCTCGGCGGAATCAAATCTGCTCCAGCTGAAACTTTTGTGCAAGAAGAAGATGTCGACGTACCTCATCGCCATTCTTCTCAGCCTATGCATTCGACCGATGACCACGGGATTGAAGCTTATGATGAAGGATTGGTGGAAGAGGACCAAGAGTATGAAGGAGATGATCAAAGAGATGACGGCGAATATGAATACGAGCAAGTGGATGACGGGGAATACACTTATGAAGAGGGCGATAACATAGATCCTGAAGAAGAGTACATGGATGACGAAGATGGTGATGATTTTGCCAAGAAGATCGGTGTCATGTCATGA 2163 43.92 MVGGGPQVLEQPPQSLPQSTSAAEEEAVKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWFWLNGNCLNPKCSFRHPPLDGLVGTPHSTTPSSQIPSQTSSIPSAPVNSSKQAVPCIFFQKGLCLKGDRCAFLHGPPPVQTNKVPQMGSNAQAGEPPSVKKVSGGTQRNSQEQKIPQANFSKSIGGSSIKLAMKDETVPSKIGKLNEKSIPPAEMADGGSRYKSTNALPTINECLLSRANRLQQSHVIDDHGLQNGKDADEFLKESSPGFDVLVDDELRGSGYYGSEEQYGRSRGHEGGNMTSMNDYDIGHSADYKMMGDVDHDVYNDVTDFDYESRQGGQYGWDHRRTSSDKLSLSSAQMERRLFPKSNSPEHVQNVDLRHRLNKQRRGNGLRSVINNENAASRPEERNYRSSRRDSHSSQESTVSNRLRGRIKLPRIPSPVRSSNIRPERDLNRGRPWGRSSPGRSQSLSNQGSNRDEIKGRLEEDYNNERRTFNGFNSRRERMDGTSDFAAPKSLAELKGDKHMVMKEQQTLGKRKGFDIEQSGGELSFEGPKPLSEILKRKRQVKAVVDLPINNAERENSERSMERSTTHPLKQSVLSSTGKDETNSLGGIKSAPAETFVQEEDVDVPHRHSSQPMHSTDDHGIEAYDEGLVEEDQEYEGDDQRDDGEYEYEQVDDGEYTYEEGDNIDPEEEYMDDEDGDDFAKKIGVMS 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15774239 15778338 - MELO3C022593.2.1 Cme10g01362 340248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01362 720 MobiDBLite consensus disorder prediction 632 656 - -
Cme10g01362 720 Pfam Zinc-finger containing family 29 84 IPR041686 -
Cme10g01362 720 Gene3D - 112 182 - -
Cme10g01362 720 ProSiteProfiles Zinc finger C3H1-type profile. 29 57 IPR000571 GO:0046872
Cme10g01362 720 MobiDBLite consensus disorder prediction 411 425 - -
Cme10g01362 720 MobiDBLite consensus disorder prediction 657 708 - -
Cme10g01362 720 MobiDBLite consensus disorder prediction 599 617 - -
Cme10g01362 720 MobiDBLite consensus disorder prediction 485 516 - -
Cme10g01362 720 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Cme10g01362 720 SMART c3hfinal6 61 84 IPR000571 GO:0046872
Cme10g01362 720 SMART c3hfinal6 29 56 IPR000571 GO:0046872
Cme10g01362 720 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Cme10g01362 720 MobiDBLite consensus disorder prediction 91 112 - -
Cme10g01362 720 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 15 720 - -
Cme10g01362 720 MobiDBLite consensus disorder prediction 147 188 - -
Cme10g01362 720 MobiDBLite consensus disorder prediction 1 24 - -
Cme10g01362 720 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 15 720 - -
Cme10g01362 720 ProSiteProfiles Zinc finger C3H1-type profile. 59 85 IPR000571 GO:0046872
Cme10g01362 720 MobiDBLite consensus disorder prediction 89 112 - -
Cme10g01362 720 MobiDBLite consensus disorder prediction 387 518 - -
Cme10g01362 720 MobiDBLite consensus disorder prediction 468 484 - -
Cme10g01362 720 MobiDBLite consensus disorder prediction 168 188 - -
Cme10g01362 720 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 142 IPR000571 GO:0046872
Cme10g01362 720 Gene3D - 18 85 - -
Cme10g01362 720 SUPERFAMILY CCCH zinc finger 117 141 IPR036855 GO:0046872
Cme10g01362 720 MobiDBLite consensus disorder prediction 583 720 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01362 - - - csv:116403891 1358.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01241 Cme-Chr2:17926118 Cme10g01362 Cme-Chr10:15774239 1.50E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1079 . . . . . . . . Cmo04g01052 . Cma04g00976 . Car04g00917 . . . . Bhi07g00087 . . . . . . . . . . . . . . . . . . . . Cme10g01362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00958 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012053 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42105 PF15663 zf-CCCH_3 1.60E-11 CL0537 Cme TF