Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01369 ATGGCTCTTCAAAATTTCTTCTCCATCCTTCTTCCCCTCTCCATCTTTCTCCAATTCCATCTCTCTTGTTCCCAAGACCCCTTAATTTGCCATTCCAATGATTCTGAGGCCTTTCAGGACTTCCACCGTAGTTTTAGTTCTCAAATCGATGGATTGCACGCTAACTGTTCCTCGAATTGCTGCACTTGTACTGGCCTCACTTGTGACTCTTCTGGGAGGGTTGTGAAGATTGAGCTTGGTGGGAGAAAGCTAGTTGGTCAATTACCAAACTCAATTGCAAGGTTCGAACACCTTACAGTTCTCAATTTGTCCTGTAATACCCTCACTGGCTCTATTCCTTTGGCTCTGTTTCAGCTCCCACACTTGGAAGTTTTTGATCTCAGCTTTAATCAGTTCTTGGGGGACTTCTCAACAGGTACCGTCCATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCGTAATTTATTCAACGGTGTTCTTCCATTTGGGATTTGTATCAACTCCACTTTTATTGAGGTTCTGAATCTGAGTTTCAATGATTTTTTTGGTGTGTTTCCTTTTCAAGTTGCCGAGTGTGTTTCTTTGAAGAGACTACATCTCGAATCGAATTTTATTAGTGGTGGGATACCTAATGAGGTTTCTGGATTGAGAAAATTGACCCATTTGTCTGTTCAGAATAACAAGCTTTCTGGTTCTTTGAATAGAATTGTTGGGAATCTAACAAGCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTTGGTGAAATTCCAGATGTTTTTTACAACTCTGTGAATTTGAGTTTCTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAGGATTCCCAAGTCCTTGTCAAACTCTGCTTCACTCTCTGTCCTAAATTTGAGAAACAATTCAATAGGAGGAAATCTCGATCTTAATTGTTCAGCAATGAAAAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCAGGGATTTATACCTAGTAATCTTCCCTCTTGTACGCAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTCGGCGGTCAGATCCCTGAAAGCTTTAGAAATTTTCAGAGCCTATCGTATTTATCACTTACAAATACGAGCATTGTTAATGTTTCGTCTGCTCTTAATGTCTTGCAACATTGTCAGAGTTTAAGTACTGTGGTTCTGACCTTTAACTTCCATGGCGAAGTGTTGGGAGATGATCCTAACTTGCATTTCAAGAGTCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAAGTTCTAATAAGTTGCAGTTTTTGGATTTGTCATGGAACCGTCTTGGAGGAAACATTCCATCCTGGTTCGGTGAATTTCAATTCATGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAACTATCCCGAAAGAGATTACTCAAATGAAAAGTTACATTGACAGAAACTTCTTGCTTGATGAACCTGCGTCACCGGATTTTTCTCTTTTCGTAAAAAGAAATGGAACTGGATGGCAGTACAATCAAGTATGGAGATTTCCACCCACTTTGGACCTTGGTTTTAATAATCTCAGTGGACCTATCTGGCCAGAGTTTGGAAATCTTAAGCAGATTATGGTTCTTGATTTGAAATTCAACAGTTTGTCGGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAGTTTAGAGACTCTAGATCTTTCTCACAACAAACTTTCAGGAATAATTCCACCATCACTGCAAAAGCTTAACTTTTTGTCCAAGTTCAGTGTCGCGTACAATCAATTACATGGAGCGATTCTTAAAGGAGGTCAGTTTCATACCTTTGCCAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGATGATCTCTGTGCATCAATTGATGGAGATCCTCTGGTAGTAACCCGCAAATCAAGAATGGTCACGGGGTCTCTTATAGGTATAATCGTGGGTGTTATCTTTGGAATCATTTTTCTCACAACATTTGTAGTTGTGTTTATGCTTCGGCCACCTCGGGGAAGAGTTGGAGATCCTGAAAACGAAGTGTCTAACATTGACAATAATGACTTGGAGGAAGTCAAGGCAGGATTGGTAGTTTTGTTCCCAAACAATGACAATGGAAGTCTCTCGCTGGAGGATATTTTGAAATCGACAAATGACTTTGATCAAGAAAATATCATTGGCTGTGGGGGTTTCGGTTTAGTTTACAAAGCTACTCTTCCTGACAGTAGAAAGGTTGCCATAAAACGATTGTCTGGTGATTGCGGTCAAATGGACAGAGAATTTCAAGCAGAAATCGAAACACTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGGTATTGTATGTATAAGAACGACAGGCTTTTAATTTACTCTTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGTCCGTCTTGCCTCGACTGGGATACCCGACTGCAGATTGCTCGGGGGGCTGCTGGGGGGCTGGCTTATTTGCATCAATTCTGTGAACCCCATATCCTTCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACAAAAATTTTAAAGCTCATTTAGCTGATTTTGGTCTTGCAAGACTCATTCTTCCCTATGATACCCACGTAACAACCGATCTTGTTGGTACATTGGGCTACATTCCACCCGAGTATGGACAATCCTCGGTTGCAACCTACAAAGGAGATGTGTACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACAGGTAAAAGACCAATAGACATGTGCAGACCGAAAGGACTTCGAGACCTGATCTCTTGGGTGTTCCAAATGAGGAAAGACAAAAAAGTAAGTGAAGTGTTCGACACATTAGTATACGATAAGAAGAACGAAACGGTGATGGTAGAAGTTCTTGATATAGCATGTCTTTGCTTATCTAAGGTACCTAAAGAGAGACCTTCAACTCAAGAGCTAGTTAATTGGCTTGATAAAGTAAGTTAA 3018 40.13 MALQNFFSILLPLSIFLQFHLSCSQDPLICHSNDSEAFQDFHRSFSSQIDGLHANCSSNCCTCTGLTCDSSGRVVKIELGGRKLVGQLPNSIARFEHLTVLNLSCNTLTGSIPLALFQLPHLEVFDLSFNQFLGDFSTGTVHLPSLRILNVSRNLFNGVLPFGICINSTFIEVLNLSFNDFFGVFPFQVAECVSLKRLHLESNFISGGIPNEVSGLRKLTHLSVQNNKLSGSLNRIVGNLTSLVRLDLSSNEFFGEIPDVFYNSVNLSFFVAESNRFSGRIPKSLSNSASLSVLNLRNNSIGGNLDLNCSAMKSLVTLDLGSNRFQGFIPSNLPSCTQLRSINLARNKLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNVLQHCQSLSTVVLTFNFHGEVLGDDPNLHFKSLQVFIIANCGLKGMIPQWLRSSNKLQFLDLSWNRLGGNIPSWFGEFQFMFYLDLSNNSFIGTIPKEITQMKSYIDRNFLLDEPASPDFSLFVKRNGTGWQYNQVWRFPPTLDLGFNNLSGPIWPEFGNLKQIMVLDLKFNSLSGSIPSSLSGMVSLETLDLSHNKLSGIIPPSLQKLNFLSKFSVAYNQLHGAILKGGQFHTFANSSFEGNNFCVQDDLCASIDGDPLVVTRKSRMVTGSLIGIIVGVIFGIIFLTTFVVVFMLRPPRGRVGDPENEVSNIDNNDLEEVKAGLVVLFPNNDNGSLSLEDILKSTNDFDQENIIGCGGFGLVYKATLPDSRKVAIKRLSGDCGQMDREFQAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAAGGLAYLHQFCEPHILHRDIKSSNILLDKNFKAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDKKVSEVFDTLVYDKKNETVMVEVLDIACLCLSKVPKERPSTQELVNWLDKVS 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15897984 15901078 - MELO3C022602.2.1 Cme10g01369 340255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01369 1005 Gene3D Phosphorylase Kinase; domain 1 692 805 - -
Cme10g01369 1005 Pfam Protein kinase domain 731 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g01369 1005 SMART serkin_6 730 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g01369 1005 PANTHER RECEPTOR-LIKE PROTEIN 55 168 1004 - -
Cme10g01369 1005 PANTHER RECEPTOR-LIKE PROTEIN 55 5 91 - -
Cme10g01369 1005 PANTHER RECEPTOR-LIKE PROTEIN 55 86 161 - -
Cme10g01369 1005 ProSiteProfiles Leucine-rich repeat profile. 568 589 IPR001611 GO:0005515
Cme10g01369 1005 Gene3D Ribonuclease Inhibitor 309 635 IPR032675 -
Cme10g01369 1005 ProSitePatterns Protein kinases ATP-binding region signature. 736 758 IPR017441 GO:0005524
Cme10g01369 1005 SUPERFAMILY RNI-like 76 398 - -
Cme10g01369 1005 Pfam Leucine rich repeat 97 155 IPR001611 GO:0005515
Cme10g01369 1005 Pfam Leucine rich repeat 523 579 IPR001611 GO:0005515
Cme10g01369 1005 Pfam Leucine rich repeat 172 229 IPR001611 GO:0005515
Cme10g01369 1005 Pfam Leucine rich repeat 314 373 IPR001611 GO:0005515
Cme10g01369 1005 SMART LRR_typ_2 312 336 IPR003591 -
Cme10g01369 1005 SMART LRR_typ_2 566 589 IPR003591 -
Cme10g01369 1005 SMART LRR_typ_2 95 119 IPR003591 -
Cme10g01369 1005 SMART LRR_typ_2 143 167 IPR003591 -
Cme10g01369 1005 SMART LRR_typ_2 216 239 IPR003591 -
Cme10g01369 1005 SMART LRR_typ_2 240 263 IPR003591 -
Cme10g01369 1005 Gene3D Ribonuclease Inhibitor 31 308 IPR032675 -
Cme10g01369 1005 SUPERFAMILY L domain-like 314 627 - -
Cme10g01369 1005 Gene3D Transferase(Phosphotransferase) domain 1 806 1004 - -
Cme10g01369 1005 Pfam Leucine Rich Repeat 437 457 IPR001611 GO:0005515
Cme10g01369 1005 PANTHER OSJNBB0004A17.8 PROTEIN 168 1004 - -
Cme10g01369 1005 PANTHER OSJNBB0004A17.8 PROTEIN 86 161 - -
Cme10g01369 1005 PANTHER OSJNBB0004A17.8 PROTEIN 5 91 - -
Cme10g01369 1005 SUPERFAMILY Protein kinase-like (PK-like) 717 1001 IPR011009 -
Cme10g01369 1005 ProSiteProfiles Protein kinase domain profile. 730 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g01369 1005 PRINTS Leucine-rich repeat signature 438 451 - -
Cme10g01369 1005 PRINTS Leucine-rich repeat signature 566 579 - -
Cme10g01369 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 852 864 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01191 Cme-Chr6:9341956 Cme10g01369 Cme-Chr10:15897984 0 dispersed
Cme09g01250 Cme-Chr9:17376219 Cme10g01369 Cme-Chr10:15897984 1.52E-163 dispersed
Cme10g01369 Cme-Chr10:15897984 Cme06g00980 Cme-Chr6:6983400 1.23E-25 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65213 PF00069 Pkinase 3.30E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01369 - - csv:116404121 1864.74