Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cme10g01390	ATGGTTAAAACTAAAAGGCGTGTATATGAATTCAAGCATCCGTTCAATGATTATCCATTCGAGGCAATGTGCTGCGGGTCTTGGCAAGCTGTGGAGAAAATAAGAATTCGTAATGGTTTAATAACCCTTCATTTAGTGAATGATCAGTTTATGGTTTTGGAAAGAGGCCCCTACTCGGATTTTCGAGTTAGGTCGAGACAGGCAACCTCATCCGACTGCACCTGTTTTCTACGACCGGGTGTTGATGTTTGTGTTCTCTCTTCCTCTCACAACATGGAAAATTTGGACATGCAAGGTCCACAGCCTGTGTGGATCGATGCTAAAATAAGCTCAATTGAACGGAGGCCTCATCAAGCTGGGTGTTCATGCCAGTTTTACGTCCAATTGTATGCTGATTCGAAACCCCTTGGTTCAGAGAAAGGATCACTCTGTAAAGAAATTGTAGAAATGGGAATAGATCAGATATCCATACTCCAAAGGGTTAGAAAGAACTTCTGTGAAGGTCAATACTACCGATGGGATTGCTCTGAGGACTCCTCTTTGTTGCCAAAAACAAAACTACTTTTGGGAAAATTTCTTTCCGACCTATCGTGGTTAATAGTTACATCAGCATTGAAACATGTCACCTTTGATGTAAGATCATTGGATAACAAGATCTTGTATCAAGTTTTAGAGAGTAACCAAAAGAGCACATCAGTAACTTCTGAAAAGATTTTACATACTGTAAACTTTAGAGATGATGATGGTATGCTTATTCCGATAATACATCAGCTAGATACCTCTGATAACATCGAGATACCTCCTGCAGAGCATGCATTTGACAATCGACTTCATTCCTTTACTGATCCTGTGGACTTAAGGCGTTCAAAACGGCGTAATGTTCAACCTGATCGTTTTCTTGGCTGTGATAGTCTTGACGAATCAGAAATTGACTACAGTGGAACTAGGATATATAAAAATGACCAATTGAATGATGATGAGATGACATTACCACTTGCTTGCCTATTTGGGACGCCTGTAAGCTCTTCAAAACTGAAGATTGAAAATGAAAGTAACCACCATTCCAATAAAGTGAGTGTACACGATGACCTCTCTGTTTTCAAGAATAGAATAAAGTCTTTGGAAATGAAATCAGGAATGAGTGATGAAGTAGAAGATAAAAATCAACTTGCCATAGTTCCTTTACTCGATGAACAGCCAATAGCATCTGATCCATATCCTAATGTTGCCAACAGTTGCGGTAATTATACAAAACAGATAACTGAAATGTCAGCCACATATTATTACATTAACAACAAAAGCAAAATCCGAAAAAGAAAGTTTTCGGACTTTCAAGATGTGGACTTTGAGAATGATATTGATAGCTGTAGAGCAAAAGCTTCGAGTAGTAAAGGTAGGAGGCCCAGTTATCATTCCATAAGTTATAAAGAGGATGGGCATCCCAAAGAAAGACAATGGCAGAAAAGGTCCTTAAGTGCAGGTGCATACAAGGATTTGATTAATTCCTTCTTGAAGAATATTGATTCAACAATTAAAAAAGAAGAGCCGCAAATAATTGATCAGTGGAAAGAATTTAAGAACAAAAGCTGCTTGGATAAAAAGATCGAGATGGAAATGCCCTCTAATGAGAAAGAGGAAGAAAGCTCTGAGATTGAAATGTTGTGGAGAGAAATGGAAATATCCCTTGCCTCTAGTTACCTTATTGATGCCAATCAGGGATTTAGTAATGGAACATCAGTGGAGCCTGAACAGAAACCAAGCAAATGGTGCAAGCATGAGTTCAAATTGAATGAAGAGATTGGGATGCTCTGCCATATATGTGGTTTTGTGAGCACTGAAATTAAAGATGTATCAGCACCATTTATGCAACACATGAGCTGGAGTACAGAAGAGCGGCGGATTGAAGAAAAAGATACAGAGCACAACAGCGACGAAGAGGAGGAGATGAATATTTTCTCTGGCCTTCCTTCTTCTGATGATACCTTGTCAGAAGAAAATGATAATGTCTGGGCCTTGATCCCCGAATTCAGAAATAAATTACATATCCACCAGAAAAAAGCATTTGAGTTCCTGTGGAAAAATATTGCCGGTTCTATGGTTCCAGCTCTCATGGATCAAGCAACTCGTAAAATAGGTGGTTGTGTGATATCCCATACACCAGGAGCTGGAAAAACCTTTCTTATCATCTCGTTCCTTGTTAGTTACTTGAAACTGTTCCCAGGGAAAAGGCCCCTTGTCCTTGCTCCAAAGACAACTCTATATACGTGGTACAAGGAGTTTATCAAGTGGGAGGTTCCTGTGCCAATTCATCTAATACATGGTCGTAGAACCTACCGAGTTTTCCGGGCAAACTCAAAACCAGTGACCTTTGCAGGTCCAAGGCCTACAGATGATGTCATGCACATCTTGGATTGCCTGGAAAAGATAAAGAAGTGGCATGCACATCCAAGTGTTCTTGTTATGGGCTATACGTCATTCCTTACATTAATGAGGGAAGATGCAAAGTTCGCACACAGAAAGTACATGGCCAAAGTTCTGCGCCAAAGTCCCGGTATCTTAATATTGGATGAGGGGCATAACCCCAGGAGTACCAAGTCCAGGCTGAGGAAAGTTTTGATGAAAGTTGAAACGGACCTCAGAATACTCCTCTCAGGGACATTGTTTCAAAATAATTTCTGTGAATATTTCAATACCCTTTGCTTGGCAAGACCCAAGTTTGTGAATGAAGTGTTGAAGAAACTAGATCCCAAATTCAAGAGGAAGAAAAAAAAAGCTCCACACTTGCAAGAAGCTCGGGCAAGGAAATTCTTTCTAGATAAGATAGCTCGGAAAATTGATGCAGGTGATGAAGAAGACAGGAGGGATGGTCTGAATATGTTAAGAAATATGACAGGTGGGTTTATTGATGTTTACGAAGGTGGCAGTAAGGATGGTCTTCCTGGTTTACAAATTTACACCTTACTAATGAACACAACTGACATTCAACAAGAAATTTTGAATAAACTTCACAAGATAATGGCTCAATTCCCTGGATACCCCCTTGAGTTAGAACTCCTCATAACCCTTGGTTCAATACATCCTTGGTTAGTAAAAACTGCAGTGTGTGCCAACAAATTTTTCACTGATAGAGAAATGATGGAGCTAGATAGATACAAATTTGATTTGAGGAAAGGATCAAAAGTGATGTTTGTTCTGAATCTTGTGTATCGTGTCGTCAAGAAGGAAAAAATTTTGATCTTCTGCCACAACATTGCACCCGTCAGACTATTTGTAGAGCTGTTTGAGAATGTGTTTAGGTGGAAGAGAGGCCGTGAAATCTTGGCCCTCACAGGAGACCTCGAGCTGTTTGAACGAGGTAAAGTGATGGATAAGTTTGAAGATCCAGTGGGGCCATCCAAAGTTCTTCTTGCTTCAATCACTGCTTGTGCAGAAGGCATAAGTTTGACAGCAGCTTCACGAGTCATCCTACTAGACTCGGAGTGGAATCCTTCAAAGACAAAGCAGGCCATTGCTCGAGCTTTTCGTCCTGGCCAGCTTAAAGTGGTTTATGTCTATCAACTACTAGTAACTGGCACACTGGAAGAAGACAAGTACAAGAGAACTACATGGAAGGAATGGGTGTCGAGTATGATTTTCAGTGAGGCATTTGTGGAGGATCCTTCTAAATGGCAAGCAGAAAAGATTGAAGATGACGTTTTAAGAGAGATGGTGGAGGAAGATAGAGTCAAATCATTTCATATGATTATGAAAAACGAGAAGGCTTCTACTGTGATCAGGGAATTAAAGGACTAG	3792	40.16	MVKTKRRVYEFKHPFNDYPFEAMCCGSWQAVEKIRIRNGLITLHLVNDQFMVLERGPYSDFRVRSRQATSSDCTCFLRPGVDVCVLSSSHNMENLDMQGPQPVWIDAKISSIERRPHQAGCSCQFYVQLYADSKPLGSEKGSLCKEIVEMGIDQISILQRVRKNFCEGQYYRWDCSEDSSLLPKTKLLLGKFLSDLSWLIVTSALKHVTFDVRSLDNKILYQVLESNQKSTSVTSEKILHTVNFRDDDGMLIPIIHQLDTSDNIEIPPAEHAFDNRLHSFTDPVDLRRSKRRNVQPDRFLGCDSLDESEIDYSGTRIYKNDQLNDDEMTLPLACLFGTPVSSSKLKIENESNHHSNKVSVHDDLSVFKNRIKSLEMKSGMSDEVEDKNQLAIVPLLDEQPIASDPYPNVANSCGNYTKQITEMSATYYYINNKSKIRKRKFSDFQDVDFENDIDSCRAKASSSKGRRPSYHSISYKEDGHPKERQWQKRSLSAGAYKDLINSFLKNIDSTIKKEEPQIIDQWKEFKNKSCLDKKIEMEMPSNEKEEESSEIEMLWREMEISLASSYLIDANQGFSNGTSVEPEQKPSKWCKHEFKLNEEIGMLCHICGFVSTEIKDVSAPFMQHMSWSTEERRIEEKDTEHNSDEEEEMNIFSGLPSSDDTLSEENDNVWALIPEFRNKLHIHQKKAFEFLWKNIAGSMVPALMDQATRKIGGCVISHTPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRVFRANSKPVTFAGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRKYMAKVLRQSPGILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKFVNEVLKKLDPKFKRKKKKAPHLQEARARKFFLDKIARKIDAGDEEDRRDGLNMLRNMTGGFIDVYEGGSKDGLPGLQIYTLLMNTTDIQQEILNKLHKIMAQFPGYPLELELLITLGSIHPWLVKTAVCANKFFTDREMMELDRYKFDLRKGSKVMFVLNLVYRVVKKEKILIFCHNIAPVRLFVELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPVGPSKVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKYKRTTWKEWVSSMIFSEAFVEDPSKWQAEKIEDDVLREMVEEDRVKSFHMIMKNEKASTVIRELKD	1263

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
10	16248829	16256425	+	MELO3C018395.2.1	Cme10g01390	340276

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cme10g01390	1263	Pfam	Helicase conserved C-terminal domain	1060	1176	IPR001650	-
	Cme10g01390	1263	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	666	907	IPR027417	-
	Cme10g01390	1263	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	19	1256	IPR044567	GO:0080188
	Cme10g01390	1263	SMART	helicmild6	1092	1177	IPR001650	-
	Cme10g01390	1263	CDD	DEXHc_ATRX-like	680	906	-	-
	Cme10g01390	1263	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	978	1239	IPR027417	-
	Cme10g01390	1263	MobiDBLite	consensus disorder prediction	628	649	-	-
	Cme10g01390	1263	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	1064	1224	IPR001650	-
	Cme10g01390	1263	MobiDBLite	consensus disorder prediction	460	483	-	-
	Cme10g01390	1263	Gene3D	-	1032	1252	IPR027417	-
	Cme10g01390	1263	Pfam	SNF2-related domain	679	929	IPR000330	GO:0005524\|GO:0140658
	Cme10g01390	1263	MobiDBLite	consensus disorder prediction	628	648	-	-
	Cme10g01390	1263	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	705	905	IPR014001	-
	Cme10g01390	1263	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2	19	1256	-	-
	Cme10g01390	1263	SMART	ultradead3	676	910	IPR014001	-
	Cme10g01390	1263	CDD	SF2_C_SNF	1059	1188	-	-
	Cme10g01390	1263	Gene3D	-	656	944	IPR038718	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cme03g00283	Cme10g01390	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cme04g00044	Cme-Chr4:286264	Cme10g01390	Cme-Chr10:16248829	2.23E-106	dispersed
	Cme10g01390	Cme-Chr10:16248829	Cme11g00153	Cme-Chr11:1640794	3.71E-82	dispersed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	42106	PF00176	SNF2_N	8.20E-17	CL0023	Cme	TR

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cme10g01390	K10875		-	csv:101215377	2423.28