Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01393 ATGCGAAATGTTGACTACAAACGAGCACGACATTTTGAGGTTGATCTATCGGCTTTCCGAAACATACTTGACATCGATAAGGAGAGAATGATTGCAAAAGTTGAGCCCCATGTGAACATGGGACAAATATCTAGAGCCACAATTCCAATGAACCTTTCACTTGCAGTGGTGGCTGAGCTCGATGACCTTACTGTTGGTGGCCTCATCAATGGCTATGGCATTGAAGGAAGCTCCCATATCTATGGTCTTTTCTCGGATACTGTTGTGGCCTATGAGATCGTTCTTGCAGATGGCAGGGTCGTAAGAGCAACCAAGGATAATGAATACTCAGATCTTTTCTATGCCATCCCGTGGTCTCAAGGAACTCTGGGCTTTCTTGTGTCTGCTGAGATCAAACTCATACATATAAAGGAATATATGAAACTTACTTACCTACCTGTGAAAGGAAAACTACAGGAGATTGGGCAGGCGTACATGGACTCATTTACGCCTAGAGACCTAGATCAAGATAACCCCGAGAAAGTTCCCGATTTTGTGGAAACCATGATTTATTCTCCTACCGAAGCCGTGTGCATGACAGGAAGATATGCATCCAAAGAAGAGGCCAAGAAGAAAGGGAACGTGATCAACAGCATTGGTTGGTGGTTCAAACCTTGGTTTTACCAGCATGCACAAAAAGCACTGATAAAGGGGGAGTTCGTGGAATATATCCCAACAAGAGAGTACTATCACAGGCACACCAGATCTTTGTACTGGGAGGGAAAGCTTATCCTTCCTTTTGCTGACCAATGGTGGTTTCGGTTTCTGTTGGGATGGATGATGCCTCCCAAGGTGTCTCTACTGAAGGCTACTCAGGGTGAAGCTATCAGAAACTATTACCATGAGATGCATATAGTCCAAGACATGCTTGTGCCTCTTAGAAGAATCGGAGATACTTTGGAGTGGATCCACAGGGAGATGGAGGTATACCCATTATGGCTCTGCCCCCACAGATTGTTTAAACCCCCAATGAAAACAATGGTGTCTCCTGAACCAGGATTTGAGCTTCAAATCAAGCAGGGCGACACCTCCTATGCTCAGATGTACACAGATATCGGAGTGTACTATGCTCCAGGGCCCGTCCTGAGGGGTGAAGTTTATGACGGTGCTCAGGCGGTTCGCAACATGGAGAACTGGCTTATTGAAATTCATGGTTTCCAACCACAGCACTCGGTGACCGAGATGAGCGAGAAAGAGTTCTGGAAAATGTTTGATTCCGAACTTTACGAGGCGTGCCGAAAGAAGTATGGAGCTATAGGGACGTTTATGCATGTTTATTACAAATGTAAGAAGGGAAGGAAGACTGAGAAGGAAATCGAGGAAGCTGAAAATGCTCAAGCTGAAACTGCTTATGCTGATGTAGAGCAGGCAAAGCTGGAGACAGTATCTGAAATCACACATGAGAAGGGCAAGAAAAAAGATAGTCAAAAGATAAATTGCTCTCTTCTGTTATTGGACAATGGGACAAGAGCACTCCAGTTACAGGATGTCTTTTCTCTGGAAAATGAAGAATCCGATGACATTACAACCTTGATTGATAAAAAAGCAAGAGAGACAAGTTTGGGAGGCCATATAAGAAGGAATAACCTCTATAGAAAGGTGATATGCGTTGAGATTGGTAGGCGAGCAAGGGTTGCTAGGCTTGTTGTGGCTACAAAAGGAGATTCGTGTTGGATATGCATAAAAGATTGGTCATATGCTACTCAAGATGAGACACGAAGAGTGGTTGAGTGTCAAGCAAAACAAGGTGAGTTGGGTGTGAGTTTTGAGTTTGTAGAGATTATTTTGCTTAAGTTAAGGCATGTGGCACAACCATGGGATGGCCGGGCGACAAGGATGCACTCAGGCTGTACGGATGACCGGGCAAAGCTAGAATCCAAGAGAGTAGGACGGAGAGTCTCAGACCGGCTGTACGCGCACGCCAAGCCTTGCCACCGTACCATTGGGCACAAGCATGCATGGTCAATGGATCCTCTTAAACCATCATTAAGTATGACGATTTGGTTTTCAAAAAAACCAGGTAACGATCAGGCTGATGAACAATCCTCCCATTACTTCGAGGCACTCTCAACTTTTGAGAAGGATGTGACTAACCAAATTCCTTAG 2145 44.85 MRNVDYKRARHFEVDLSAFRNILDIDKERMIAKVEPHVNMGQISRATIPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGRVVRATKDNEYSDLFYAIPWSQGTLGFLVSAEIKLIHIKEYMKLTYLPVKGKLQEIGQAYMDSFTPRDLDQDNPEKVPDFVETMIYSPTEAVCMTGRYASKEEAKKKGNVINSIGWWFKPWFYQHAQKALIKGEFVEYIPTREYYHRHTRSLYWEGKLILPFADQWWFRFLLGWMMPPKVSLLKATQGEAIRNYYHEMHIVQDMLVPLRRIGDTLEWIHREMEVYPLWLCPHRLFKPPMKTMVSPEPGFELQIKQGDTSYAQMYTDIGVYYAPGPVLRGEVYDGAQAVRNMENWLIEIHGFQPQHSVTEMSEKEFWKMFDSELYEACRKKYGAIGTFMHVYYKCKKGRKTEKEIEEAENAQAETAYADVEQAKLETVSEITHEKGKKKDSQKINCSLLLLDNGTRALQLQDVFSLENEESDDITTLIDKKARETSLGGHIRRNNLYRKVICVEIGRRARVARLVVATKGDSCWICIKDWSYATQDETRRVVECQAKQGELGVSFEFVEIILLKLRHVAQPWDGRATRMHSGCTDDRAKLESKRVGRRVSDRLYAHAKPCHRTIGHKHAWSMDPLKPSLSMTIWFSKKPGNDQADEQSSHYFEALSTFEKDVTNQIP 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16359669 16374782 + MELO3C022613.2.1 Cme10g01393 340279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01393 714 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, BULB-TYPE LECTIN DOMAIN, FAD-BINDING, TYPE 2-RELATED 1 469 - -
Cme10g01393 714 PANTHER 24-DEHYDROCHOLESTEROL REDUCTASE 1 469 IPR040165 -
Cme10g01393 714 SUPERFAMILY FAD-binding/transporter-associated domain-like 12 134 IPR036318 GO:0050660
Cme10g01393 714 Pfam FAD binding domain 14 103 IPR006094 GO:0050660
Cme10g01393 714 Coils Coil 450 470 - -
Cme10g01393 714 Gene3D - 15 136 IPR016169 -
Cme10g01393 714 ProSiteProfiles PCMH-type FAD-binding domain profile. 1 136 IPR016166 GO:0071949
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01393 K09828 DHCR24, DWF1; Delta24-sterol reductase [EC:1.3.1.72 1.3.1.-] - csv:101217570 957.207
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02409 Cme-Chr1:32394679 Cme10g01393 Cme-Chr10:16359669 0 dispersed
Cme06g00928 Cme-Chr6:6511481 Cme10g01393 Cme-Chr10:16359669 6.95E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1041 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme10g01393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001111 3 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 6 2 2 2 2 2 3 5 1 80