Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme10g01432 | ATGGGTGGGAATTCGCCGTGTGCCTCCTGCAAACTCCTCCGACGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCCAGCAATGTGAGCAAAATGTTACAGGAGCTGCCAGTTCAGCAAAGAGGCGACGCGGTGATGAGTTTAGTCTATGAAGCAAGTGCAAGAGTGAGGGACCCGGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAATTACAAATGCAATTGGCTGTTGCTCAAGCTGAGATTCTTTGTATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGATAAATCTTCCTCTCTTCTTCTCCCCCCGCCCTCTCCTCCCCCCTCTCAGTGCCTCAATTTTGCTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA | 504 | 47.02 | MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKSSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS | 167 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 17308943 | 17309692 | - | MELO3C018380.2.1 | Cme10g01432 | 340318 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme10g01432 | 167 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
Cme10g01432 | 167 | Coils | Coil | 85 | 105 | - | - | |
Cme10g01432 | 167 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 2 | 116 | - | - | |
Cme10g01432 | 167 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 12-LIKE | 2 | 116 | - | - | |
Cme10g01432 | 167 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01534 | Cme-Chr1:20301579 | Cme10g01432 | Cme-Chr10:17308943 | 1.53E-56 | dispersed | |
Cme06g00964 | Cme-Chr6:6846900 | Cme10g01432 | Cme-Chr10:17308943 | 2.29E-42 | dispersed | |
Cme10g01432 | Cme-Chr10:17308943 | Cme11g01727 | Cme-Chr11:25352249 | 1.01E-61 | dispersed | |
Cme11g02516 | Cme-Chr11:31667442 | Cme10g01432 | Cme-Chr10:17308943 | 3.07E-36 | dispersed | |
Cme10g01432 | Cme-Chr10:17308943 | Cme11g01769 | Cme-Chr11:25921359 | 6.16E-49 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42107 | PF03195 | LOB | 3.80E-42 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme10g01432 | - | - | csv:101204801 | 327.791 |