Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01432 ATGGGTGGGAATTCGCCGTGTGCCTCCTGCAAACTCCTCCGACGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCCAGCAATGTGAGCAAAATGTTACAGGAGCTGCCAGTTCAGCAAAGAGGCGACGCGGTGATGAGTTTAGTCTATGAAGCAAGTGCAAGAGTGAGGGACCCGGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAATTACAAATGCAATTGGCTGTTGCTCAAGCTGAGATTCTTTGTATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGACGATAAATCTTCCTCTCTTCTTCTCCCCCCGCCCTCTCCTCCCCCCTCTCAGTGCCTCAATTTTGCTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA 504 47.02 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKSSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17308943 17309692 - MELO3C018380.2.1 Cme10g01432 340318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01432 167 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Cme10g01432 167 Coils Coil 85 105 - -
Cme10g01432 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 116 - -
Cme10g01432 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 116 - -
Cme10g01432 167 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01534 Cme-Chr1:20301579 Cme10g01432 Cme-Chr10:17308943 1.53E-56 dispersed
Cme06g00964 Cme-Chr6:6846900 Cme10g01432 Cme-Chr10:17308943 2.29E-42 dispersed
Cme10g01432 Cme-Chr10:17308943 Cme11g01727 Cme-Chr11:25352249 1.01E-61 dispersed
Cme11g02516 Cme-Chr11:31667442 Cme10g01432 Cme-Chr10:17308943 3.07E-36 dispersed
Cme10g01432 Cme-Chr10:17308943 Cme11g01769 Cme-Chr11:25921359 6.16E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42107 PF03195 LOB 3.80E-42 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01432 - - csv:101204801 327.791