Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01458 ATGTGCGCAGTTGCAGCGACGACAACCACGATGACTCCAATTTTCTCGTCTCCAAAGATCGCTTCACTTCTTTGCAAATCCTCCTCTCTCAATTCCTCTACCTCTTCATCTTCGCCCAGATCGTTATCCACTCCAATGAACCTTCATGTTTCTGCATCGTCTTCCCCGTCCCCCTCCTCTGTTTCCCATGTTGATACGGTTTTGAAGAGGAAGAGGCCCGCGAGAATCCACGTGCCGCACAGTATGCCGTCGATTGGATTTGGAATACTCGAGACGCCGGAAGTGATGGAGGAGGAAGGGGAAGGATATTCGGTTTATTGCAAAAGAGGAAGAAGACGAATCAGTGCTATGGAGGATCGATTCTCAGTTAGCGTCGGAATTCAAGGAGATTCTCGACAGGCTTTCTTCGGAGTTTTCGATGGACACGGTGGAGCGAAAGTGGCGGAAATCGCGGCGAAACGTTTGAGTGAAAACGTAATCGATCAAGTATGGAGAAGAACAGAATCGGAAGTCGAGGAAGCGATCAAAGACGGCTATCTAATGACGGATCGGGAAGTATCGGAGGAAGGCGGCGGCGCTTGTTGCGTCACTGCATTGATACGGAACGGGAATCTGGCGGTGTCGAACGTCGGCGACTGTCGCGCGGTGTTGAGTCGAAACGGAAGAGCGGAAGCCCTAACCTCGGATCACAGGGCGGGAAGAGAAGACGAGAGAAATCGGATCGAGAAATCGGGCGGTTATGTGGATTGTTGCGGTGGTGGATGGAGAGTTCAAGGAACATTAGCTGTATCAAGAGCCATGGGAGATGAGCATCTGAAACAGTGGGTGATATCGGAGCCGGAGTCGAGAGTGATGAAGATTGAAGATGATTGTCGTTTCTTGATTCTTGCTTCTGATGGTCTTTGGGACAAGGTTACAAATCAAGAAGCAGTAGACATGGTAGAAGCAGTCTGTGGCGTAGAGATAAAGAAGAATAGGCCAATTAATCCGAAATTAATAATGTCAGCATGCAAACAATTGGTGACATTGTCAACATCAAGAGGCTCCCTCGACGACACCACTGTTATGATCATTCAACTAAATTAG 1086 48.8 MCAVAATTTTMTPIFSSPKIASLLCKSSSLNSSTSSSSPRSLSTPMNLHVSASSSPSPSSVSHVDTVLKRKRPARIHVPHSMPSIGFGILETPEVMEEEGEGYSVYCKRGRRRISAMEDRFSVSVGIQGDSRQAFFGVFDGHGGAKVAEIAAKRLSENVIDQVWRRTESEVEEAIKDGYLMTDREVSEEGGGACCVTALIRNGNLAVSNVGDCRAVLSRNGRAEALTSDHRAGREDERNRIEKSGGYVDCCGGGWRVQGTLAVSRAMGDEHLKQWVISEPESRVMKIEDDCRFLILASDGLWDKVTNQEAVDMVEAVCGVEIKKNRPINPKLIMSACKQLVTLSTSRGSLDDTTVMIIQLN 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17809458 17811606 - MELO3C018362.2.1 Cme10g01458 340344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01458 361 CDD PP2Cc 102 360 IPR001932 -
Cme10g01458 361 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169
Cme10g01458 361 MobiDBLite consensus disorder prediction 32 64 - -
Cme10g01458 361 SMART PP2C_SIG_2 118 360 IPR001932 -
Cme10g01458 361 Pfam Protein phosphatase 2C 115 340 IPR001932 -
Cme10g01458 361 SMART PP2C_4 95 358 IPR001932 -
Cme10g01458 361 MobiDBLite consensus disorder prediction 32 65 - -
Cme10g01458 361 Gene3D - 95 361 IPR036457 -
Cme10g01458 361 ProSiteProfiles PPM-type phosphatase domain profile. 102 360 IPR001932 -
Cme10g01458 361 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 15 361 - -
Cme10g01458 361 PANTHER PROTEIN PHOSPHATASE 2C 15 361 IPR015655 GO:0004722|GO:0006470
Cme10g01458 361 SUPERFAMILY PP2C-like 102 361 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01049 Cme10g01458 CCT
Cme03g01049 Cme10g01458 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00021 Cme-Chr3:488587 Cme10g01458 Cme-Chr10:17809458 6.40E-85 dispersed
Cme06g01115 Cme-Chr6:8480427 Cme10g01458 Cme-Chr10:17809458 1.15E-48 dispersed
Cme08g00077 Cme-Chr8:529928 Cme10g01458 Cme-Chr10:17809458 5.19E-39 dispersed
Cme10g01458 Cme-Chr10:17809458 Cme12g00066 Cme-Chr12:638954 1.09E-68 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01458 K17506 - csv:101208170 596.66