Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01474 ATGGATGATGAGGTGGTTCAGCGAGTTCTCCAGGAAGGCAGAGACTTTTACCAAAAACAGCCCTCTACTTCCACCTCTTCCTCCTCCATACTTCAATCACTGCCTCTTCATGTGTCTTTCGATCATGGATATTATCTATTAGTGAAATCCATTCAAGAACTTAGAGAGAAAAAATATGGTCTTGTAACGGTTGGCATTGGTGGTCCAAGCGGCTCGGGTAAAACCAGCTTAGCAGAGAAAGTGGCCTCTGTAATTGGCTGTAATGTTGTATCAATGGAAAACTATCGTGATGGAGTTGATGAGGGGAATGATTTGGATTCAATAGACTTTGATCTTCTAATTCAGAATCTTGAGGATTTGATAAATGGAAGGGACACCATGATCCCAGTTTTTGACTTTCATCTAAAGAAACGGGTCAGTTCAAAAATAATAAAGAGTGCTTCATCTGGGGTGGTAATCATTGATGGAACCTATGCATTACATGCAAAATTACGTTCTTTGCTAGATATTCGGGTGGCAGTGGTTGGTGGGGTTCATTTTAACCTTCTTTCCAAAGTTCGACATGATATTGGAGATTCCTGTTCATTGGATTATCTTATTGATAGCATCTTTCCGTTGTTTAGAAAGCACATAGAGCCGGACCTTCATCATGCTCAGATAAGAATTAATAACAGCTTTGTCTCATCATTTAGGGAGGCAATATACAAGCTGAAATGTAGAAGTGAGTTCCCAGATGTAGATTCTGCCCATGCTTTTCAAGGAAATAAAACACATATAGACAATTTTATCGAGATGTATCTTAGGCCTCCATCTGCAAGTGAAGAAGCACGTATAAATGACTGGATTAAAGTGCGACAATCGGGTATTAAGTACTACCTAGCACTTGGTGACCAGAGGATAGTTGACAAAAATTTTATTATCAGACCTAAAGCTGAATTTGAGGTTGGACGGATGACTTTAGGTGGATTGCTGGACTTGGGCTATACAGTAGTGGTTGGTTATAAAAGGGCATCTATATCGGTAAATAAGGGCAATGTCTCTGTGTCACTTGAAACAATTGATTCTCTTGGTGAGACATTCATGGTGCTGCGAAGCTCAAATAGAAAAACAGTTGGAGAAGAAGTGTTGAGGATGGGTATCACAGGGTCTTGGATTACAAAGTCTTATCTGGAGATGATTCTGGAAAGAAAAGGTGTACCACGATTAAATACACCTCCACTTCTACCAAACACACCTCTGGCTAATAACCAAGAAAAGGTTGTCATTGCTCCCAGGCCCATCCGTGTTACTTCAAATCTTGTTTCCCGACTTGAGGATCTTTCTCAGCCGTGGACCAGATCTCCAACAAAATCTCAAATGGAACCAGTAGTTGCAACGTGGCAATTTATTAGCGCTCCCCAATCTGATAATTTAGCGACTGACTACTCTCATGAAGCAACCACAGATCCCGCCTCTTTCAGGGACTCTATGAGGCTTGCTCCAATGCCTGATTCATGTGACCTGGACAGAGGTTTACTTTTAGCTGTTCAAGCGATTCAGGCCTTATTGGAGAACAAAGGTCTTCCTATTATTGTTGGAATTGGTGGTCCAAGTGGGTCAGGGAAGACTAGTTTAGCTCATAAAATGGCTAATATTGTTGGATGTGAAGTAATTTCGCTTGAAAGTTATTACAGATCAGAGCAAGTGAAGGATTTCAAGTATGATGATTTCAGCACACTTGATCTGTTGCTGCTATCCAAGAATATTGATGACATGAGAAATGGTCGAAGAACAAAAGTACCGCTTTTTGACTTGGAGACTGGTGCTCGAAGTGGTTTTAAGGAGCTTGAAGTTTCTGAAGACTGTGGAGTGATAATTTTCGAAGGAGTATATGCTTTACATCCAGACATCAGGAAATCACTTGACTTATGGATTGCTGTTGTTGGAGGTGTTCATTCACATCTAATTTCTCGAGTCCAAAGAGATAAATGTAAAGCAGGGTGTTTCATGTCACAAAATGACATAATGATGACAGTTTTCCCTATGTTTCAGCAGCACATCGAACCACATCTTGTCCATGCACATCTGAAAATACGTAATGACTTTGATCCTGTGCTTTCACCTGAGAGCTCATTATTTGTCCTGAAGAGTAACAAGCAGGTTGCTTATCAAGATATACTCAAACTTCTTGAATCATCAAAGGCTTGCAGTTCTATACAAAATTTCATTGATATATATTTGAGGCTTCCGGGAATTCCTACAAATGGACAGTTGACAGAGAGTGATTGTATACGAGTTAGAATTTGTGAAGGCCGATTTGCATTGTTAATACGGGAGCCTATAAGAGAAGGGAATTTCATTATTCAACCTAAGGTGGACTTTGACATTAGTATTAGTACAGTCGCTGGCCTTCTCAATCTTGGGTATCAAGCCATGGCTTATATTGAAGCATCTGCGTATATTTACCAAGATGGAAAGATCTTAATTGAGGTTGACCATTTACAAGATGCTCCTTGTCCCTATCTCCAAATAAAAGGGGTTGATAAAGAAGCTGTTGCAGCAGCTGGTTCTATGCTCGAACTGAATGATTCTTACACTACAAAGAGCTATCTTCAAATAATTTTGGAAAGTTTGCCACCAAACCGGAGTTCTGGCCTAATCCATAATCATCAAGCTGCAAGGCTGCAAGAACTTGTGGAATTTATTCAATCTCAGGGAAGTAGTACAGCTTCAGAATCCTCCCCTAGTAGAGAAGCATCATCTCCATTGGAAGGGATCATTGAAGACATGCAGTCCAGAATTAGAAGACTTGAACGATGGCTTGCAATTAATACAATTTTGTGGACCTTTTTTGTTTCCGCCTTTGTTGGTTATTCACTCTACCGGACCAAGCGTCAGTGA 2880 40.35 MDDEVVQRVLQEGRDFYQKQPSTSTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKYGLVTVGIGGPSGSGKTSLAEKVASVIGCNVVSMENYRDGVDEGNDLDSIDFDLLIQNLEDLINGRDTMIPVFDFHLKKRVSSKIIKSASSGVVIIDGTYALHAKLRSLLDIRVAVVGGVHFNLLSKVRHDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKCRSEFPDVDSAHAFQGNKTHIDNFIEMYLRPPSASEEARINDWIKVRQSGIKYYLALGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYTVVVGYKRASISVNKGNVSVSLETIDSLGETFMVLRSSNRKTVGEEVLRMGITGSWITKSYLEMILERKGVPRLNTPPLLPNTPLANNQEKVVIAPRPIRVTSNLVSRLEDLSQPWTRSPTKSQMEPVVATWQFISAPQSDNLATDYSHEATTDPASFRDSMRLAPMPDSCDLDRGLLLAVQAIQALLENKGLPIIVGIGGPSGSGKTSLAHKMANIVGCEVISLESYYRSEQVKDFKYDDFSTLDLLLLSKNIDDMRNGRRTKVPLFDLETGARSGFKELEVSEDCGVIIFEGVYALHPDIRKSLDLWIAVVGGVHSHLISRVQRDKCKAGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKLLESSKACSSIQNFIDIYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAMAYIEASAYIYQDGKILIEVDHLQDAPCPYLQIKGVDKEAVAAAGSMLELNDSYTTKSYLQIILESLPPNRSSGLIHNHQAARLQELVEFIQSQGSSTASESSPSREASSPLEGIIEDMQSRIRRLERWLAINTILWTFFVSAFVGYSLYRTKRQ 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18270658 18298489 + MELO3C018345.2.1 Cme10g01474 340360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01474 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 694 IPR027417 -
Cme10g01474 959 PANTHER URIDINE KINASE 611 950 - -
Cme10g01474 959 PANTHER URIDINE KINASE 2 420 - -
Cme10g01474 959 PANTHER URIDINE KINASE 487 611 - -
Cme10g01474 959 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 611 950 - -
Cme10g01474 959 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 420 - -
Cme10g01474 959 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 487 611 - -
Cme10g01474 959 Gene3D - 711 871 - -
Cme10g01474 959 SUPERFAMILY CYTH-like phosphatases 723 866 IPR033469 -
Cme10g01474 959 CDD UMPK_like 524 694 - -
Cme10g01474 959 Pfam Phosphoribulokinase / Uridine kinase family 106 222 IPR006083 GO:0005524|GO:0016301
Cme10g01474 959 Pfam Phosphoribulokinase / Uridine kinase family 524 691 IPR006083 GO:0005524|GO:0016301
Cme10g01474 959 CDD UMPK_like 63 225 - -
Cme10g01474 959 PRINTS Uridine kinase signature 522 539 - -
Cme10g01474 959 PRINTS Uridine kinase signature 549 560 - -
Cme10g01474 959 PRINTS Uridine kinase signature 645 655 - -
Cme10g01474 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 175 IPR027417 -
Cme10g01474 959 Gene3D - 521 710 IPR027417 -
Cme10g01474 959 Gene3D - 62 240 IPR027417 -
Cme10g01474 959 SMART AAA_5 60 210 IPR003593 -
Cme10g01474 959 SMART AAA_5 521 674 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01474 - - - csv:101220584 1805.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00321 Cme-Chr10:2103810 Cme10g01474 Cme-Chr10:18270658 6.09E-56 dispersed
Cme10g01474 Cme-Chr10:18270658 Cme02g01792 Cme-Chr2:24718314 1.19E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g429 . . . . . Bpe10g00920 . . . . . Cma04g00029 . . . . . . . . . . . . . . . . . . . Cone13ag0762 Cone19ag0766 . . . . . Cme10g01474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01026 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008378 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 35