Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01488 ATGGGATCAGACGACGACAATAATAGAAATGGGAGTAGCAAGCGGTCAGAGCCGCCCCGGGGTCCACCGGAGCACTGTGTGGAAATTATTCATCCGGTGGTTCCCCCTCCGAGGAGAAGCTGGTTGGAGAAGATGAGGAACCGCCTAAAGGAAATCTTTTTCCCGGACGATCCTCTCCGGCAGTTCAAGGGCCAATCTCCGGCCAGAAAATGGGTTATTGGAGCTCAATATATATTCCCAATTCTTGAATGGGGTTCTCATTATAACTTTGCCCTTTTTAAATCTGATGTTGTTGCTGGTCTCACCATTGCTAGCTTGGCCATTCCTCAGGGTATTAGCTATGCTAAGCTTGCTAATTTGCCTCCCATTGTTGGACTTTATTCAAGCTTTGTTCCACCATTAGTATATGCTGTTCTTGGAAGCTCAAGAGATCTAGCAGTTGGACCTGTTTCAATTGCATCATTAATATTAGGTTCAATGTTGAGACAAGAAGTTTCTCCCATCAAAGATCCCATTCTTTTTCTTCAACTTGGCTTCACTGCCACCTTCTTCGCCGGTCTCTTTCAGGCTTCACTCGGCTTTCTCAGACTTGGGTTTATAATAGATTTCCTATCCAAGGCCACTTTGATTGGATTCATGGCAGGAGCAGCCATTATTGTGTCTTTACAGCAACTTAAAGGCTTGCTTGGAATCACTCATTTCACTAAACAAATGGGTTTGATTCCTGTTTTGTCCTCAGTTTTTCATCACACTAATGAGTGGTCATGGCAGACTATTCTCATGGGCTTTTGTTTCCTTCTCTTTCTCCTCCTCACAAGACACATTAGCATGAAGAGGCCAAAGTTGTTCTGGGTATCAGCTGGAGCTCCTTTAGTATCTGTCATTCTTTCAACTATTTTGGTTTTTGCATTCAAGGCCAATCGCCATGGCATCAGTATTATAGGAAAATTGGAAGAAGGATTGAACCCACCTTCATTGAACATGCTTCGCTTTGAAGGATCACACCTTGGTCTTGTTATTAAGACTGGTCTTGTCACCGGCATCATCTCTCTCACGGAAGGAATCGCAGTAGGGCGAACTTTTGCAGCTATAAAAGACTATCGTGTGGATGGTAACAAGGAAATGATTGCAATCGGCCTCATGAACGTGGTTGGCTCTTTCACGTCTTGCTATGTAACAACAGGTGCGTTTTCAAGGTCAGCAGTGAACCATAATGCAGGGGCCAAAACCGCAGTGTCTAACATCGTAATGTCTGTCACGATAATGGTAACCTTGTTGTTTCTGATGCCTCTTTTTCAATACACTCCCAATCTGGTGTTGGCTGCCATCATCGTCACTGCCGTCGTCGGCCTTATCGACGTCCCAGCTGCATATGCCATTTGGAAGGTCGACAAGTTCGACTTTGTTGTGATGCTTTGTGCCTTTTTCGGAGTCATTCTCATCTCTGTTCAACATGGTCTCGCCATCGCTGTTGGGATATCAATTTTCAAGATCATCCTACAAATCACAAGGCCAAAAACAGCGATGTTGGGGAACATAGGTGGAACAGATATATATAGAAACATTCACCAATACAAGGATGCAATGAGCGTTCAAGGCTTTCTCATTTTAAGCATTGAAGCTCCGATCAACTTTGCCAACGCCACTTATCTGAATGAAAGGATTTTGAGATGGATTGAGGATTATGAAGCTGGTCAAGATCATGTTAAGAAGGAGGGCTCTGACCTTCAGTTTGTGGTTTTAGAATTATCTGCTGTGAGTGCTATAGACACTAGTGGAGTCCTACTCTTCAAAGATCTAAGGAGAGCATTGGAAAAGAAGGGTGTTGAGCTTCTGTTGGTAAACCCAATGGGTGAAGTATTGGAGAAGTTGCAAAAAGCAGATGAAAATCAAGAGATCTTGAGGCCAAATCATGTTTTCTTAACAGTGGGAGAGGCCGTTGCTTTATTATCAACAACAATGAAGGGACAATCCTCAACTATATAG 1986 43.55 MGSDDDNNRNGSSKRSEPPRGPPEHCVEIIHPVVPPPRRSWLEKMRNRLKEIFFPDDPLRQFKGQSPARKWVIGAQYIFPILEWGSHYNFALFKSDVVAGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLILGSMLRQEVSPIKDPILFLQLGFTATFFAGLFQASLGFLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKGLLGITHFTKQMGLIPVLSSVFHHTNEWSWQTILMGFCFLLFLLLTRHISMKRPKLFWVSAGAPLVSVILSTILVFAFKANRHGISIIGKLEEGLNPPSLNMLRFEGSHLGLVIKTGLVTGIISLTEGIAVGRTFAAIKDYRVDGNKEMIAIGLMNVVGSFTSCYVTTGAFSRSAVNHNAGAKTAVSNIVMSVTIMVTLLFLMPLFQYTPNLVLAAIIVTAVVGLIDVPAAYAIWKVDKFDFVVMLCAFFGVILISVQHGLAIAVGISIFKIILQITRPKTAMLGNIGGTDIYRNIHQYKDAMSVQGFLILSIEAPINFANATYLNERILRWIEDYEAGQDHVKKEGSDLQFVVLELSAVSAIDTSGVLLFKDLRRALEKKGVELLLVNPMGEVLEKLQKADENQEILRPNHVFLTVGEAVALLSTTMKGQSSTI 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18577803 18588797 + MELO3C018338.2.1 Cme10g01488 340374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01488 661 MobiDBLite consensus disorder prediction 1 24 - -
Cme10g01488 661 PANTHER BNAA09G30120D PROTEIN 30 656 IPR030313 -
Cme10g01488 661 PANTHER SULFATE TRANSPORTER 30 656 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme10g01488 661 TIGRFAM sulP: sulfate permease 80 646 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme10g01488 661 Pfam STAS domain 525 646 IPR002645 -
Cme10g01488 661 MobiDBLite consensus disorder prediction 1 26 - -
Cme10g01488 661 SUPERFAMILY SpoIIaa-like 530 650 IPR036513 -
Cme10g01488 661 Pfam Sulfate permease family 93 473 IPR011547 GO:0016021
Cme10g01488 661 ProSitePatterns SLC26A transporters signature. 122 143 IPR018045 GO:0008271|GO:0008272
Cme10g01488 661 ProSiteProfiles STAS domain profile. 524 650 IPR002645 -
Cme10g01488 661 CDD STAS_SulP_like_sulfate_transporter 525 643 - -
Cme10g01488 661 Gene3D STAS domain 504 653 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02046 Cme-Chr1:29216975 Cme10g01488 Cme-Chr10:18577803 6.01E-35 dispersed
Cme02g01334 Cme-Chr2:19266865 Cme10g01488 Cme-Chr10:18577803 2.67E-27 dispersed
Cme06g00580 Cme-Chr6:3732248 Cme10g01488 Cme-Chr10:18577803 0 dispersed
Cme09g00879 Cme-Chr9:11871499 Cme10g01488 Cme-Chr10:18577803 0 dispersed
Cme10g01488 Cme-Chr10:18577803 Cme01g02672 Cme-Chr1:34201307 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01488 K17471 - csv:101219163 1233.01