Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01499 ATGGCGCCCATTAATCGCTCTCGAATTCTCCTATTCATCCTCCTCCAATTGTTCCTCTCCCAAACCCTAGCTCGAAAGCCCCACCTTATCGATTTCCGATCCCCAAATCTCTACCCGGAAGGCCTAGTTTGGGACACATCCGCCCAGCATTTTGTCGTCGGCTCACTCCACCACCGCACTCTCGTCTCCGTCTCCGACGCCGGCGTCGCCGAAACCCTTATCCGCGATCCCAGCCTCCCCGAAAACGTCTCGATCTTAGGCCTTACCATCGATTCAGTCAACAGCCGCCTCCTCGCCGTCGTCCACGCCGCCCCACCTCTCCCAGAATTCAACGCCCTCGCCGCTTACGACCTCCGATCTCGCCATCGCATCTCCTTAACACCTCTCTTTTCCGATGGAACCTCCAGTCACCGCCCCGTCGCGAACGCCGTCGCGGTCGATTTCAAGGGTAACGCTTTCATCACGAACTCCGCCGGAAATTTTATCTGGAAGGTAGACAAAGACGGATCAGCCTCGATCTTCTCGAAATCCGCGAGTTACAGTTCCTATCCCGCAACTCCGAACGAAGTGTACTCGTCCTCAGGGCTAAACGGCGCCGTTTACGTAAGCAAAGGGTACCTTCTGGTGGTGCAATCGAACACGGGAAAGATGTACAAGGTGGACGCCGATGACGGAACGGCGAGGTTGGTTTTGCTTAACAAAGAATTGAAAGGGGCGGACGGGATAGCGGCGAGGAAAGACGGCGTCGTTTTGGTGGTGTCTTATAGAAAGCTGTGGTTCTTGAAGAGTGAGGATAGTTGGGGGGAGGGAGTGGTTTATGACGAAATTGACCTTGATGAAGAGAAGTTTGCTACTGCTGTAACTGTGGGGAATGAGGGAAGAGTTTATGTATTGAATGGGTATGTGAATGAGGGGTTAAATGGTAATTTGGGAAGGGAGATGTTTGGTATAGAGGAAATGAGGTCTGCCAAAGAGAGTGAAGAAGAAAGGGTTTGGGTGTATGTATTGGTTGGGTTTGGATTGGCTTATTTCTTGTTTTGGAGATTTCAAATGAAGCAACTCATAGGGAACATGGACAAGAAAACTAATTGA 1092 51.37 MAPINRSRILLFILLQLFLSQTLARKPHLIDFRSPNLYPEGLVWDTSAQHFVVGSLHHRTLVSVSDAGVAETLIRDPSLPENVSILGLTIDSVNSRLLAVVHAAPPLPEFNALAAYDLRSRHRISLTPLFSDGTSSHRPVANAVAVDFKGNAFITNSAGNFIWKVDKDGSASIFSKSASYSSYPATPNEVYSSSGLNGAVYVSKGYLLVVQSNTGKMYKVDADDGTARLVLLNKELKGADGIAARKDGVVLVVSYRKLWFLKSEDSWGEGVVYDEIDLDEEKFATAVTVGNEGRVYVLNGYVNEGLNGNLGREMFGIEEMRSAKESEEERVWVYVLVGFGLAYFLFWRFQMKQLIGNMDKKTN 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18678388 18679708 - MELO3C018333.2.1 Cme10g01499 340385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01499 363 SUPERFAMILY NHL repeat 34 300 - -
Cme10g01499 363 PANTHER NHL DOMAIN PROTEIN 10 362 - -
Cme10g01499 363 Gene3D - 29 307 IPR011042 -
Cme10g01499 363 PANTHER - 10 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01499 - - - csv:116405618 655.595
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g02097 Cme-Chr7:25691575 Cme10g01499 Cme-Chr10:18678388 7.99E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g416 . . . . . . Bma14g01594 . Cmo04g01080 . Cma04g01002 Cma04g00059 . Car04g00057 . . . . . . . . . . Cla07g00596 Cam07g0622 Cec07g0688 Cco07g0670 Clacu07g0629 Cmu07g0654 Cre07g1000 . . . . Lsi04g01134 . . Cme10g01499 . . . . Bpe11g01606 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01040 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011671 2 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30