Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01505 ATGGGAAACACCTTTGGAGTCAAGAAGACGGTTAAGGTTATGAAGATCTCCGGCGAGACCCTGAAACTAAATACCCCGGTTCAAGTTGGAGATGTCGTCAAGGATTATCCTGGCTTTGTTCTACTCGAATCTGAGGCTGTTAAGCACTACGGGGTTCGAGCAAAGCCTTTGGAGCTCCACCAGAAGCTCAGCACCAAGAGACTTTATTTCCTCGTCGATCTTCCTAAACTTCCAAAAGAACAGGCTCCACGACGAGTACGGTCAGCGATCAACATGAGTGCAAAGGATAGGTTAGAGAGCTTGATGTTGGCACGACGATCAGCATCGGACCTAACTATCATGAAACCAAAGAGCGTGTTGACGGAGGAGGGAGGTGGAGAGAGTGAGGGATCGGGATCAGGAGCAACACGGGTGAAGGTACGGTTGCCGAAGGCCGAAGTGGAAAGACTGTTGAAGGAGTGTAAAGATGAAGCAGAGGCAGCAGAAAGGATTATGGGATTGTACAAAACAAGAGAGAGTGTTTGTGAAAATGATCACAAGGAGAAGGAGAAGAAGGATATCATCAAGCCCCGTGAG 576 48.44 MGNTFGVKKTVKVMKISGETLKLNTPVQVGDVVKDYPGFVLLESEAVKHYGVRAKPLELHQKLSTKRLYFLVDLPKLPKEQAPRRVRSAINMSAKDRLESLMLARRSASDLTIMKPKSVLTEEGGGESEGSGSGATRVKVRLPKAEVERLLKECKDEAEAAERIMGLYKTRESVCENDHKEKEKKDIIKPRE 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18883852 18884761 + MELO3C034251.2.1 Cme10g01505 340391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01505 192 Pfam PADRE domain 1 162 IPR025322 -
Cme10g01505 192 PANTHER PLASTID MOVEMENT IMPAIRED PROTEIN 1 183 - -
Cme10g01505 192 Coils Coil 144 164 - -
Cme10g01505 192 MobiDBLite consensus disorder prediction 172 192 - -
Cme10g01505 192 MobiDBLite consensus disorder prediction 117 139 - -
Cme10g01505 192 PANTHER PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED 1 183 - -
Cme10g01505 192 MobiDBLite consensus disorder prediction 171 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01505 - - - csv:101209526 304.293
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00037 Cme-Chr9:302431 Cme10g01505 Cme-Chr10:18883852 3.27E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g413 . . . . . Bpe10g00992 . . Cmo04g01076 . Cma04g00998 . Car04g00937 Car04g00054 . . . . . . . . . . Cla07g00603 Cam07g0629 Cec07g0694 Cco07g0679 Clacu07g0634 Cmu07g0659 Cre07g1007 Cone13ag0772 Cone19ag0774 . . Lsi04g01142 . . Cme10g01505 . . . . Bpe11g01608 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01045 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006957 2 1 0 1 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 37