Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01508 CTGTATCCTCTTTGTTTTCTTCTCCTTCATTTTTCTATTGGTTCATACCCTCAGATTCTCTCTCCAAACAAATTTCTTCCATTTTTTCCATTCCAATCTTTGAAGATAAACCCACTAACACATTCTCAACTCTACCCCATTTACATTCTCTTCATTGCCGCCGGAACAATGGCCGGACATGTCGCCGGCGACAGCGACACTGCCCCGGCTCTGGCTCTACTTGACTTTGTTCGCGATGTTGTTCGAATGTCGGCCGGGACCAACACTGGACAGCTTTTCAAGAAGGATTGCACCGATCTGGTTCGTCGGATCGTGCTTTTGACGCATTTCTTTGAGGAAATCAGAGACTCTAATGCCCTTCAATTTCGGTTCCTTGATGCATCTTCTTCTTCCTCTTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTGGTGCTGTTACTGCCAGAGGTTCCTCTCAGTTTCCATGGCTTTGTGATTTAGTAGCTGCATTGAAGGATACTAAACGCCTAATCTTCATCGCTTCGACTTTCCGGTCCTATGGTTCTTCTTCTGAAGAAGTTGCCAAGAAGATACTGTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTAGGCAATCTTCCTTATGAGCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAAAGCTCAATTGAGAAGGGCAGCAGAAAAATATGAATCTCTTACTGCAATTCCACCATCTGTTGTTCAATCTCAGTTGTTGAAGAAAAATGTGGATCTGTTAAATTTGAACTGGATTGATAGCTCTGATGTTGAAGAGAATGGTATTGTTGATCATGAGATTACAGTGAAATTTGATGCATTTCCAAATTGTAGAGGGTTGATGAATGGTGGTGTGGATCAATTGATTTTCAAAGGACTTGAGAAACTTCCATCCGCTTCAGAGGTTTCTTCTAATGAACATAATGATTCTGCCAAAAAGGGCGGAGACCAGGTGAAGAACCCAGATGGAGTTACAATACCTGATGATTTTTTATGCCCAATATCTTTGGAAATAATGAGGGATCCTGTTATTGTCTCCACTGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTGACTCTCACCCCAAATTACGTGTTGCGAAGTCTCATTAGTCAATGGTGTGTTAATCACAATATCGAGCAACCTACAGGTTTAACTAACGGGAAGATAAAAAAGTGTGATGGATCGTACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGTTAACTAGTCATTCCATCGAGGAGCGGAGAGCATCAGTGACCGAACTTCGATCTCTATCAAAAAGAAGCACGGATAATAGAATACTGATAGCTGAGGCAGGAGCAATTCCTGCATTGGTCAATCTATTAACTTCTGATGATGTTTTAATACAAGAAAACGCAGTTACTTCCATTCTAAACCTCTCAATATATGAGAACAACAAAGGTTTAATTATGCTTGCTGGTGCTGTACCTTCCATTGTTCAAGTTCTTAGAGTCGGAAGTATGGAAGCAAGAGAAAATGCAGCAGCAACACTTTTTAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGCGCTTCTGGGGCTATTCCAGCTCTTGTGGATTTACTCGAAAATGGAAGCTCAAGAGGAAAGAAGGATGCCGCAACAGCACTATTTAATTTGTGCATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCGTTTCAGCTCTATTACAGATGCTTACGGACTCAGTTAACTCCATGATCGACGAAGCTCTCACAATAATGTCAGTCCTGGCTAGCCATCAAGAAGCAAAAGTAGCTATGGTGAAAGCCAGTACCATACCTGTTCTAATAGATCTTCTGAGGACCGGATTGCCTCGCAACAAAGAAAATGCTGCCGCTATTTTGCTTGCTTTATGTAAGCGAGATACTGACAACCTTTCTTGTATAAGTAGGCTTGGCGCCGTGATTCCGCTGACAGAGCTTGCCAAGAGTGGGACGGAAAGAGCGAAAAGGAAGGCGACTTCATTGTTGGAGCATCTTCGAAAATTGCAGCAGTTATAG 2157 42.61 LYPLCFLLLHFSIGSYPQILSPNKFLPFFPFQSLKINPLTHSQLYPIYILFIAAGTMAGHVAGDSDTAPALALLDFVRDVVRMSAGTNTGQLFKKDCTDLVRRIVLLTHFFEEIRDSNALQFRFLDASSSSSSSSSSSSSSSGAVTARGSSQFPWLCDLVAALKDTKRLIFIASTFRSYGSSSEEVAKKILFQFQCVTWKLEKALGNLPYERLDISEEVQEQVELVKAQLRRAAEKYESLTAIPPSVVQSQLLKKNVDLLNLNWIDSSDVEENGIVDHEITVKFDAFPNCRGLMNGGVDQLIFKGLEKLPSASEVSSNEHNDSAKKGGDQVKNPDGVTIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIVSALLQMLTDSVNSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18915283 18919090 - MELO3C018328.2.1 Cme10g01508 340394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01508 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 561 603 IPR000225 GO:0005515
Cme10g01508 718 CDD RING-Ubox_PUB 343 385 IPR045210 -
Cme10g01508 718 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 76 715 - -
Cme10g01508 718 SMART arm_5 632 672 IPR000225 GO:0005515
Cme10g01508 718 SMART arm_5 591 631 IPR000225 GO:0005515
Cme10g01508 718 SMART arm_5 674 714 IPR000225 GO:0005515
Cme10g01508 718 SMART arm_5 550 590 IPR000225 GO:0005515
Cme10g01508 718 SMART arm_5 468 508 IPR000225 GO:0005515
Cme10g01508 718 SMART arm_5 509 549 IPR000225 GO:0005515
Cme10g01508 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 412 IPR013083 -
Cme10g01508 718 Pfam Armadillo/beta-catenin-like repeat 551 589 IPR000225 GO:0005515
Cme10g01508 718 Pfam Armadillo/beta-catenin-like repeat 469 507 IPR000225 GO:0005515
Cme10g01508 718 SUPERFAMILY RING/U-box 336 412 - -
Cme10g01508 718 SUPERFAMILY ARM repeat 429 712 IPR016024 -
Cme10g01508 718 Pfam U-box domain 339 410 IPR003613 GO:0004842|GO:0016567
Cme10g01508 718 Gene3D - 418 525 IPR011989 -
Cme10g01508 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 479 521 IPR000225 GO:0005515
Cme10g01508 718 MobiDBLite consensus disorder prediction 313 335 - -
Cme10g01508 718 Gene3D - 617 717 IPR011989 -
Cme10g01508 718 PANTHER U BOX DOMAIN-CONTAINING 76 715 - -
Cme10g01508 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Cme10g01508 718 Gene3D - 526 616 IPR011989 -
Cme10g01508 718 SMART Ubox_2 342 405 IPR003613 GO:0004842|GO:0016567
Cme10g01508 718 Coils Coil 698 718 - -
Cme10g01508 718 Coils Coil 216 243 - -
Cme10g01508 718 ProSiteProfiles U-box domain profile. 338 412 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00227 Cme-Chr8:1525376 Cme10g01508 Cme-Chr10:18915283 3.34E-17 dispersed
Cme08g00614 Cme-Chr8:3957635 Cme10g01508 Cme-Chr10:18915283 6.42E-12 dispersed
Cme09g01399 Cme-Chr9:19176931 Cme10g01508 Cme-Chr10:18915283 0 dispersed
Cme10g01508 Cme-Chr10:18915283 Cme12g00199 Cme-Chr12:2053105 5.86E-153 dispersed
Cme12g01706 Cme-Chr12:23910004 Cme10g01508 Cme-Chr10:18915283 3.49E-70 dispersed
Cme10g01508 Cme-Chr10:18915283 Cme11g01284 Cme-Chr11:19590109 3.26E-156 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01508 - - csv:101221534 1207.2