Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01515 ATGGCGAAATACCAAATTCAGACTAGTAGATTAGCGCATCATCTCTTCTGTCTCAGGTCCCATTATGTTCTCTCCATGCTACCAAAATTGTGCCTACGAACAAAGCACGAATTTGCTGGTAATCTGTTTGAACTTGGTAAATATGCCACTACAAGCATCCCGATTCGACCGAAGTTGCTCATTAAGATATCAGATGTAATGGCTCATGATGATTGTATTGAGAATGGACAATACAACAATCAATCCAATTCAATTCCTTCAGATCCAGACGAAGATTGTGATGTTTCTAAAGCATGTAAAAAATTTCCATCCATCAAGTTGGGAAGTTCACCTCCAGTCGAATTATTTGATGGCTCGGCATGCCATTCAGATATTGCGAGTTTTTTAGCAGCTAAAAGCAGCAAGAACTTTTATCTGAATTCAACTTGTGAAGAGTGTGTACAAGATGAAGATCGAACCTTGCCTTCTCTGTACCCTGCCCTTCCAGATGTAGGAAATTCTTCAGTTAGTGAAGAATATACTTTAACGACTGGTTCATCCCTTCTGCCTATGAATATTGAGACTGGAACCATTTCGAGTAATCCAGCAGTGGAAGGAGATTCTTCGAAAAAGAAGTCAACATCAGAAAATACGGCAGTATCTGGCAGGTCATTTCTTGACCAATCAGTTGGTTGCATATCTGGCTTAAGTAAGAGGCACCAGCGCCAGCTTGATGATAGTGGATTTCACACTTTAGGGAAATTACTACATCATTTTCCTCGGACCTATGCCGATTTACGAAATCCTCAGGTTCATATTGATGATGGACAATACATAATATTTGTAGGAAAAGTCTTGTCATCAAGGGGAATCAGAGCTAGTTACTCCTTTTCATTTCTTGAGGTAGTTGTGTGCTGTGAAATTGCAGAAAGGGAATCAAATTCTGGTTGTACGGTTGATGATAATACTGGTGGAAAGAAGATAATTTATTTGCACTTGAAGAAATTCTTTCGTGGTAATCGGTTTACGTTCACGCCTTTTCTAAGACGTCTTGGAGAGAAGCATAAAGAGGGAGAGGTTGTTTGTGTAAGTGGTAAGGTAAGGACTATGCAATCTGAAGATCACTATGAGATGAGAGAATATAACATTGACGTTCTTCAAGACGAAAAGGATGTACCACTTTATGCAAAAGAGAGGCCATATCCTATATATCCTTCTAAAAGGGGATCAAGTCCAACATTTCTTAGAGATATTATAGCCAGAGGCATAGATGCATTGCCTATCAATGTAGATCCCATTCCAGAAGACATAACTCAGGGCTTTGGGCTGTTGCGTCTTCGTGATGCATATAACGGGATTCATCGGCCAAAGAGTATAAAGGAAGCTGATTTGGCTCGCAAACGTTTTATGTTTGATGAGTTTTTTTACCTGCAGTTGGCACGCTTGTTCCAAATGCTGGAACGTCTTGGTACAAGAATAGAGAAAGACTGTTTGCTGGACAAGTATCGTCAACCTCATTTAAATGCTGCATATATGAAGGATTGGGCTTGTCTCACCCAAAAGTTCCTTAAAGCCCTTCCGTATTCCCTTACAGTGAGTCAGATGAAAGCTATTGCAGAAATTATATGGGATTTGAAGCGACCAATTCCTATGAATAGGCTCTTGCAGGGTGACGTAGGATGTGGGAAGACAGTGGTTGCTTTTCTGGCATGCATGGAAGTTATAGGCACTGGATATCAGGCAGCATTCATGGTTCCGACTGAGTTACTTGCTATTCAGCATTATGAGCACTTGCTTGGTTTGTTAGAGAACATGGAAGGGGTCGAGAATAAACCTTCAGTTGCTTTACTGACAGGTTCTACCTCATCAAAACAATCACGGATGATTCGCGAGGGCCTTCAATCAGGAGAGATTTCTTTAGTTATTGGAACTCAGAGTCTAATATCGGAAAAAGTGGAGTTCTCTGCTTTACGCATTGCAGTTGTGGATGAGCAGCACCGTTTTGGTGTAGTTCAGAGAGGGAAGTTTGGTAGTAAGTTATTCAACAACTCTATAAGTTCGAAAATTGCCGCAGAGCACTCTGATGGAACCTCAAGTGGAGATTTCTCTATGGCTCCTCATGTTCTTGCCATGTCAGCCACTCCTATTCCAAGGACGCTTGCTCTTGCACTGTATGGAGAAATGTCACTGACTCATATTACTGATTTACCTCCTGGACGGGTACCAGTCAAAACATATTCAATTCTGGGTAACGATGAAGGCTTTGAGAAGGTTTATGAGATGATGCTGGATGAGTTAGATAAAGGAGGGAAGGTGTATCTCGTATATCCAGTGATTGAGCAATCCGATCAGCTGCCTCAGCTACATGCTGCTTCAGAAGGTCTTCAATCCATTTCTTACAGGTTTCAGGGCTATAACTGTGGGTTGTTGCACGGGAAAATGAAGAAAGATGAAAAAGAGGAAGCGTTACGGAGATTTCGAAACGGAGATATTCAGATACTACTTTCTACTCAAGTGATCGAGGTTGGAGTGGATGTTCCTGATGCGTCAATGATGGTTGTTATGAATGCTGAGAGGTTTGGAATTGCTCAGCTCCATCAATTAAGAGGACGAGTTGGACGTGGAATGAAGAAGTCTAGGTGCATCTTGGTGGCATCGACTACAAGCAGCTTAAGTCGGTTGAAGGTGTTGGAGAATTCATCTGATGGATTTCATTTGGCAGAAGTTGATCTTCTTTTACGTGGGCCTGGTGATTTACTTGGTAGAAAGCAGTCGGGACATCTTCCAGAATTTCCAATTGCAAGATTGGAGGTAGATGGGAATATTTTGGAAGATGCACATCTTGCCGCTTTGAAAATTTTAAGCATTTCTGATGATTTGGAGCAGTTTCCTGCCCTGAAGATGGAGCTTAGCATGAGGCAGCCACTTTGTCTACTTGGTGATTAG 2925 41.61 MAKYQIQTSRLAHHLFCLRSHYVLSMLPKLCLRTKHEFAGNLFELGKYATTSIPIRPKLLIKISDVMAHDDCIENGQYNNQSNSIPSDPDEDCDVSKACKKFPSIKLGSSPPVELFDGSACHSDIASFLAAKSSKNFYLNSTCEECVQDEDRTLPSLYPALPDVGNSSVSEEYTLTTGSSLLPMNIETGTISSNPAVEGDSSKKKSTSENTAVSGRSFLDQSVGCISGLSKRHQRQLDDSGFHTLGKLLHHFPRTYADLRNPQVHIDDGQYIIFVGKVLSSRGIRASYSFSFLEVVVCCEIAERESNSGCTVDDNTGGKKIIYLHLKKFFRGNRFTFTPFLRRLGEKHKEGEVVCVSGKVRTMQSEDHYEMREYNIDVLQDEKDVPLYAKERPYPIYPSKRGSSPTFLRDIIARGIDALPINVDPIPEDITQGFGLLRLRDAYNGIHRPKSIKEADLARKRFMFDEFFYLQLARLFQMLERLGTRIEKDCLLDKYRQPHLNAAYMKDWACLTQKFLKALPYSLTVSQMKAIAEIIWDLKRPIPMNRLLQGDVGCGKTVVAFLACMEVIGTGYQAAFMVPTELLAIQHYEHLLGLLENMEGVENKPSVALLTGSTSSKQSRMIREGLQSGEISLVIGTQSLISEKVEFSALRIAVVDEQHRFGVVQRGKFGSKLFNNSISSKIAAEHSDGTSSGDFSMAPHVLAMSATPIPRTLALALYGEMSLTHITDLPPGRVPVKTYSILGNDEGFEKVYEMMLDELDKGGKVYLVYPVIEQSDQLPQLHAASEGLQSISYRFQGYNCGLLHGKMKKDEKEEALRRFRNGDIQILLSTQVIEVGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRCILVASTTSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGRKQSGHLPEFPIARLEVDGNILEDAHLAALKILSISDDLEQFPALKMELSMRQPLCLLGD 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19087347 19133619 + MELO3C018322.2.1 Cme10g01515 340401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01515 974 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 894 950 IPR045562 -
Cme10g01515 974 Pfam DEAD/DEAH box helicase 527 711 IPR011545 GO:0003676|GO:0005524
Cme10g01515 974 MobiDBLite consensus disorder prediction 186 212 - -
Cme10g01515 974 CDD DEXHc_RecG 464 730 - -
Cme10g01515 974 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 537 726 IPR014001 -
Cme10g01515 974 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 747 905 IPR001650 -
Cme10g01515 974 Gene3D - 737 907 IPR027417 -
Cme10g01515 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 880 IPR027417 -
Cme10g01515 974 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 22 974 - -
Cme10g01515 974 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 22 974 - -
Cme10g01515 974 Pfam Helicase conserved C-terminal domain 750 868 IPR001650 -
Cme10g01515 974 TIGRFAM recG: ATP-dependent DNA helicase RecG 241 941 IPR004609 GO:0003678|GO:0006281|GO:0006310
Cme10g01515 974 SMART helicmild6 772 869 IPR001650 -
Cme10g01515 974 SMART ultradead3 519 737 IPR014001 -
Cme10g01515 974 Gene3D - 476 727 IPR027417 -
Cme10g01515 974 SUPERFAMILY Nucleic acid-binding proteins 219 418 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01515 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] - csv:101221994 1835.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01111 Cme-Chr9:15744688 Cme10g01515 Cme-Chr10:19087347 7.32E-64 dispersed
Cme10g01515 Cme-Chr10:19087347 Cme07g00675 Cme-Chr7:5757419 1.99E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g422 . . . . . . Bma14g01597 . . . . . . . . . . . . . . . . . Cla07g00622 Cam07g0642 . Cco07g0699 . Cmu07g0670 Cre07g1019 Cone13ag0764 . . . Lsi04g01153 . . Cme10g01515 . Blo11g00729 . . Bpe11g01604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006958 1 2 1 1 1 2 1 2 1 0 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 2 1 1 37