Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01545 ATGGCATACAAATCAATACCAGGAAGAAAGTATTGGAGAAAAGTGGTGCATTTGGTTTTGCATCTAATGGCATTAGCATCTGGAATTTTTGGTGTTTGTATGGCTTTCAAGTTTCACCATGAAATCAAACTTTCAGACCTTCTTTCATTGCATTCTTGGATTGGTTTGATAGCCATTTCCTTGTATGCTTTTCAGTGGATATTTGGTTTCTTTGTGTACTTCTTCCCTGGAGCAGAATCAAGAAGAAGAGGAAACATGTTGCCATGGCATGTTTACTTTGGAATATTCATATTTTTAATAGCAACATGCAATGCTGAATTAGGGTTACTTCAAAGGTTCAATACATTGGTTTTAGGTCATTCACAGCAAGGCCTTATTGTCAACTTCACTGGCCTTCTTCTTCTTCTCTATGCCGCCACTGTTGTGCTCACTGTCATTCTTCCACCCCTTTACTAA 456 38.16 MAYKSIPGRKYWRKVVHLVLHLMALASGIFGVCMAFKFHHEIKLSDLLSLHSWIGLIAISLYAFQWIFGFFVYFFPGAESRRRGNMLPWHVYFGIFIFLIATCNAELGLLQRFNTLVLGHSQQGLIVNFTGLLLLLYAATVVLTVILPPLY 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19760460 19761039 + MELO3C018298.2.1 Cme10g01545 340431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01545 151 Pfam Eukaryotic cytochrome b561 3 112 IPR006593 -
Cme10g01545 151 PANTHER CYTOCHROME B561-RELATED 1 148 IPR043205 GO:0016491
Cme10g01545 151 SMART 561_7 1 109 IPR006593 -
Cme10g01545 151 PANTHER CYTOCHROME B561 FAMILY PROTEIN, EXPRESSED 1 148 - -
Cme10g01545 151 ProSiteProfiles Cytochrome b561 domain profile. 1 146 IPR006593 -
Cme10g01545 151 Gene3D - 1 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01545 K08360 CYB561; transmembrane ascorbate-dependent reductase [EC:7.2.1.3] - zju:107429205 186.037
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01298 Cme-Chr9:17985551 Cme10g01545 Cme-Chr10:19760460 1.64E-37 dispersed
Cme10g00300 Cme-Chr10:1960972 Cme10g01545 Cme-Chr10:19760460 7.52E-17 dispersed
Cme10g01545 Cme-Chr10:19760460 Cme09g00161 Cme-Chr9:1234506 8.90E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g316 . . . . . . . . . . . . . . . . Cpe01g01794 . . . . . . . . . . . . . . . . . . . . . Cme10g01545 . . . . . Bpe02g02263 Bma01g00173 . . Cmo04g02154 . Cma04g02057 . Car04g01997 . . . . . . . . . . . . . . . . . . Csa05g01489 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012392 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 29