Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01634 ATGGTGTTCCAAGATTTCGACCAAATCTCCGAACGCCGACGAGCCGAGAGGGCTCGTAAGTTTCGTAAGAGAGTCACCATTGCCGTTGTCTCGGCCTCCGTCATCCTCCTCGTCGTTGCTGCCGCTGTGTTCGTTCAAGTCTCTTCCTCCTCTAAATCCACCACCAAAAATGGTGATAGCGGCAGTAGCACTGGCAACTCCAAAAAACCCCTGCCACCAGAAACAAAACAAGTATCACGTGTCGAGAAAATGATTACCATGATATGCAACTCCACAGACTACAAAGGAAAATGCGAGAGCACGCTGAAGGATGGTCTCCACACAGATCCTAATTCCTCCGACCCAAAAGATCTCATCAAGCTGGCAATCTCGGCAGCTGCGCATGAAGTGAAATCTGCGGTGAAAAAGGCATCTGGGTTCAACTTTGCGACCCCGGAGGAAAAGGGAGCGTTCGAGGACTGCAAGGTGCTGTTGGAAGACGCAGTGGAGGAGTTGGAGATGTCAATGAGCGAAGTGAGCAAGAAAAATATGGGAAAGCTGACGGCAAAAACGACACCGGATCTGAACAATTGGCTAAGCGCGGTGATGTCGTATCACGAAACTTGTGTTGATGGTTTTCCAGAGGGGAAGATGAAGAGCGAAATGGAGAAGGTTGTGAAGGCTGGAAAGGAATTAACCAGTAATTCATTGGCGATGATTTCGCAGGTGGCTTCATTCTTCTCGACGTTTGAGATGCCGGAGGGAGCTGCATCACGACGTCGTCTAATGGCCACGAAAGGAGTGCCGACTTGGATGAACAGCAATGAGCGGAGGATGTTGAAGGGAGCTGCGGCTGGAGAAAAGCCAAAGCCTAACGTTGTGGTCGCGAAAGATGGCTCTGGAGAATTCAAAACGATTAATGAAGCCTTGGCAGCCATGCCTGCCAAATATGATGGACGGTACGTGATCTATGTGAAGGAAGGAATCTACGATGAGACCGTAGTGATTACTAAAAAGATGGTGAATGTAACAATGTATGGAGATGGATCTCAAAAGAGCATGATTAGTGGGAGCAAGAACTTTGTGGATGGGGTTAGAACCTTCCAAACCGCGACATTTGTGGCACTTGGAGAGGGGTTCTTGGGGCAGGCCATAGGATTCAGAAACATAGCGGGTCCAGAAAAGCACCAAGCCGTAGCGGCGAGAGTCCAAGCAGACAGAGCCATATTCGTGAACTGCCGGTTCGAGGGATACCAAGACACATTATACGCCCAAGCACATCGTCAATTCTACAGAAGCTGTCTGATAACAGGAACCATAGACTTCATATTCGGGGACGCGGCAGCCATTTTCCAAAACTGTAACATGATGATAAGAAAGCCGTTAGATAACCAACAGAACATAGTGACAGCACAAGGCAGAACCGACAAGCATGAAACCACAGGGATTGTCCTACAAAACTGCAAGATATTGCCGGATAAGACACTTGAGGCCGTGAAGTCACAATTCAAAAGCTACTTGGGAAGGCCATGGAAAGAATTCTCAAGAACCATTGTAATGGAGTCAAAGATTGAAGATGTGATTCATCCGGATGGTTGGATGGCTTGGCAAGGGGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACCAAGGGCCAGGGGCTAAGACCGATGCTAGGGTCAAATGGCCTGGCTACAAGGTGATCGATAAGGATGAGGCTGCAAAGTTTACAATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCACCTCGGCTCCTGTTCATGTCGGCCTATTTTGA 1788 48.21 MVFQDFDQISERRRAERARKFRKRVTIAVVSASVILLVVAAAVFVQVSSSSKSTTKNGDSGSSTGNSKKPLPPETKQVSRVEKMITMICNSTDYKGKCESTLKDGLHTDPNSSDPKDLIKLAISAAAHEVKSAVKKASGFNFATPEEKGAFEDCKVLLEDAVEELEMSMSEVSKKNMGKLTAKTTPDLNNWLSAVMSYHETCVDGFPEGKMKSEMEKVVKAGKELTSNSLAMISQVASFFSTFEMPEGAASRRRLMATKGVPTWMNSNERRMLKGAAAGEKPKPNVVVAKDGSGEFKTINEALAAMPAKYDGRYVIYVKEGIYDETVVITKKMVNVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGEGFLGQAIGFRNIAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYAQAHRQFYRSCLITGTIDFIFGDAAAIFQNCNMMIRKPLDNQQNIVTAQGRTDKHETTGIVLQNCKILPDKTLEAVKSQFKSYLGRPWKEFSRTIVMESKIEDVIHPDGWMAWQGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIDKDEAAKFTIGTFLELDWIESTSAPVHVGLF 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22079261 22081586 - MELO3C022882.2.1 Cme10g01634 340520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01634 595 SMART PMEI_2 80 232 IPR006501 GO:0004857
Cme10g01634 595 TIGRFAM PME_inhib: pectinesterase inhibitor domain 81 236 IPR006501 GO:0004857
Cme10g01634 595 MobiDBLite consensus disorder prediction 51 77 - -
Cme10g01634 595 Coils Coil 155 175 - -
Cme10g01634 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 83 236 IPR035513 -
Cme10g01634 595 Pfam Pectinesterase 285 579 IPR000070 GO:0030599|GO:0042545
Cme10g01634 595 Pfam Plant invertase/pectin methylesterase inhibitor 84 232 IPR006501 GO:0004857
Cme10g01634 595 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 593 - -
Cme10g01634 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 237 IPR035513 -
Cme10g01634 595 SUPERFAMILY Pectin lyase-like 282 579 IPR011050 -
Cme10g01634 595 ProSitePatterns Pectinesterase signature 2. 429 438 IPR033131 -
Cme10g01634 595 Gene3D - 283 595 IPR012334 -
Cme10g01634 595 MobiDBLite consensus disorder prediction 51 73 - -
Cme10g01634 595 CDD PMEI-like_3 88 238 - -
Cme10g01634 595 PANTHER PECTINESTERASE 14 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01396 Cme-Chr4:19793938 Cme10g01634 Cme-Chr10:22079261 1.49E-140 dispersed
Cme06g00752 Cme-Chr6:4959491 Cme10g01634 Cme-Chr10:22079261 1.49E-170 dispersed
Cme09g01227 Cme-Chr9:17168044 Cme10g01634 Cme-Chr10:22079261 4.43E-175 dispersed
Cme09g01228 Cme-Chr9:17177618 Cme10g01634 Cme-Chr10:22079261 1.68E-173 dispersed
Cme10g00546 Cme-Chr10:3489531 Cme10g01634 Cme-Chr10:22079261 1.65E-06 dispersed
Cme10g01634 Cme-Chr10:22079261 Cme11g02031 Cme-Chr11:28124390 2.71E-166 dispersed
Cme10g01634 Cme-Chr10:22079261 Cme02g00063 Cme-Chr2:557265 3.69E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01634 - - csv:101211510 1078.93