Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme10g01655 | ATGCTCTTCTTCTTCGCCGACATTACTATCCAACAAATTGGGGTTTCTCCCCTTTCCTTTTCAATGGGTAGTAGGTTTAAAGGACACTGTGAATTCTGTGCTGGGGTTCTGTTGAATTGTGGTGAACGTTTAGAAATGGATGAAAATGGTGGGATCAAGATGGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGGGTCACAGTATGCCCGAAATCCAAAGCAGCAGCCCATGAAAATGGAAGCCAAAATCAAAATCAAAACCATGGGATCCTTTCACCGGCAATCAACAAAAGGCTGACGAATGTGTTGTGTTGTGATTCGGATGAGGAGACTTGCCAGAGCCCTGAGCACCCACCCGATGTGCCGAAAGGGTACTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGATTTATCATTCCCACCAGCTATCTTAGCCATTCGGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTCGATCATAGCGGCGGGCTCACTTTCCCTTGCGAAATCGAGACCTTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCCTCCTGATGACCACACCCCAGCTGAGAGTTCTTTGACCATGGAAGAATAA | 639 | 48.04 | MLFFFADITIQQIGVSPLSFSMGSRFKGHCEFCAGVLLNCGERLEMDENGGIKMGIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKRLTNVLCCDSDEETCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHSGGLTFPCEIETFKYLLKCMESQQKDPPDDHTPAESSLTMEE | 212 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 22665754 | 22668503 | - | MELO3C022909.2.1 | Cme10g01655 | 340541 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme10g01655 | 212 | Pfam | Auxin responsive protein | 118 | 189 | IPR003676 | GO:0009733 | |
| Cme10g01655 | 212 | MobiDBLite | consensus disorder prediction | 193 | 212 | - | - | |
| Cme10g01655 | 212 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 50 | 201 | IPR003676 | GO:0009733 | |
| Cme10g01655 | 212 | PANTHER | BNAA02G05090D PROTEIN | 50 | 201 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g00312 | Cme-Chr4:2445454 | Cme10g01655 | Cme-Chr10:22665754 | 1.40E-26 | dispersed | |
| Cme08g01187 | Cme-Chr8:8399072 | Cme10g01655 | Cme-Chr10:22665754 | 3.83E-20 | dispersed | |
| Cme10g01655 | Cme-Chr10:22665754 | Cme08g00916 | Cme-Chr8:6035141 | 2.27E-20 | dispersed | |
| Cme10g01655 | Cme-Chr10:22665754 | Cme11g00449 | Cme-Chr11:4360484 | 6.88E-21 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme10g01655 | K14488 | - | csv:101207913 | 340.502 |