Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01673 ATGGAGCTGACTACTCATGATCCTCCTATCCCCATCCCTATTCCTATCCCCTTAAATAGTCGTTACGCCGGCCACAACCACGACCACGACCATATCATCCACCACCATGACCCTTCTTCCACCCGTAACCATATCATTTCCGCTACCGTTAATGGTAGCAACAACCAAATGGAAGTGGATCTTCATCATCATAACAATAACAACAACAACAACAAGAAGCATATCAAGTACAAAGAGTGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCCACAGACGGTTGCGGTGAGTTCATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCTTGCAATTGTCACAGAAACTTCCATCGAAAAGAGATCGAAGGAGAACCCTATGATTGGCTCCACCACTCCCGCCTTGGGCGGAAGCTTCTCGTAGGTGGGAAAAACATGATTGGCCCACCAGAGCCTGCAGCATTCGCATACCCGACTGCAGGAGGGGCGACGTTCATATCATCTAGAGCAGCAACAACACAACCTCACCACATGATTATGTCGTACAACATGCTGGGTGGGGGCGGTGGGCACTCGGAGTCAGAGGAGCAGGAGGAAGGAATAGGAGCAGGAGTTGGGGGAAGGGTCTATTCGGGGGCGATGATGAATAAGAAACGATTTCGAACGAAGTTCACGACGGAGCAAAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAACAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAAGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGAAACAATGTCACCTTCTCATTCTCCTAATAATCCCTTAAATTAA 897 47.94 MELTTHDPPIPIPIPIPLNSRYAGHNHDHDHIIHHHDPSSTRNHIISATVNGSNNQMEVDLHHHNNNNNNNKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHSRLGRKLLVGGKNMIGPPEPAAFAYPTAGGATFISSRAATTQPHHMIMSYNMLGGGGGHSESEEQEEGIGAGVGGRVYSGAMMNKKRFRTKFTTEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKETMSPSHSPNNPLN 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22954692 22955884 + MELO3C022921.2.1 Cme10g01673 340559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01673 298 Pfam ZF-HD protein dimerisation region 75 127 IPR006456 -
Cme10g01673 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 77 126 IPR006456 -
Cme10g01673 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 76 127 IPR006456 -
Cme10g01673 298 Gene3D - 211 284 - -
Cme10g01673 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 22 284 - -
Cme10g01673 298 SUPERFAMILY Homeodomain-like 215 283 IPR009057 -
Cme10g01673 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 222 278 IPR006455 -
Cme10g01673 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01977 Cme-Chr4:27378003 Cme10g01673 Cme-Chr10:22954692 4.06E-55 dispersed
Cme07g01665 Cme-Chr7:22285844 Cme10g01673 Cme-Chr10:22954692 3.69E-44 dispersed
Cme08g00852 Cme-Chr8:5615815 Cme10g01673 Cme-Chr10:22954692 2.19E-53 dispersed
Cme09g00278 Cme-Chr9:2138970 Cme10g01673 Cme-Chr10:22954692 5.33E-50 dispersed
Cme10g00417 Cme-Chr10:2641879 Cme10g01673 Cme-Chr10:22954692 5.88E-46 dispersed
Cme10g01673 Cme-Chr10:22954692 Cme12g01805 Cme-Chr12:24517627 6.89E-39 dispersed
Cme10g01673 Cme-Chr10:22954692 Cme03g01952 Cme-Chr3:27478925 2.40E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42112 PF04770 ZF-HD_dimer 4.50E-29 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01673 - - csv:101218143 548.51