Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01673 ATGGAGCTGACTACTCATGATCCTCCTATCCCCATCCCTATTCCTATCCCCTTAAATAGTCGTTACGCCGGCCACAACCACGACCACGACCATATCATCCACCACCATGACCCTTCTTCCACCCGTAACCATATCATTTCCGCTACCGTTAATGGTAGCAACAACCAAATGGAAGTGGATCTTCATCATCATAACAATAACAACAACAACAACAAGAAGCATATCAAGTACAAAGAGTGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCCACAGACGGTTGCGGTGAGTTCATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCTTGCAATTGTCACAGAAACTTCCATCGAAAAGAGATCGAAGGAGAACCCTATGATTGGCTCCACCACTCCCGCCTTGGGCGGAAGCTTCTCGTAGGTGGGAAAAACATGATTGGCCCACCAGAGCCTGCAGCATTCGCATACCCGACTGCAGGAGGGGCGACGTTCATATCATCTAGAGCAGCAACAACACAACCTCACCACATGATTATGTCGTACAACATGCTGGGTGGGGGCGGTGGGCACTCGGAGTCAGAGGAGCAGGAGGAAGGAATAGGAGCAGGAGTTGGGGGAAGGGTCTATTCGGGGGCGATGATGAATAAGAAACGATTTCGAACGAAGTTCACGACGGAGCAAAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAACAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAAGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGAAACAATGTCACCTTCTCATTCTCCTAATAATCCCTTAAATTAA 897 47.94 MELTTHDPPIPIPIPIPLNSRYAGHNHDHDHIIHHHDPSSTRNHIISATVNGSNNQMEVDLHHHNNNNNNNKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHSRLGRKLLVGGKNMIGPPEPAAFAYPTAGGATFISSRAATTQPHHMIMSYNMLGGGGGHSESEEQEEGIGAGVGGRVYSGAMMNKKRFRTKFTTEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKETMSPSHSPNNPLN 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22954692 22955884 + MELO3C022921.2.1 Cme10g01673 340559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01673 298 Pfam ZF-HD protein dimerisation region 75 127 IPR006456 -
Cme10g01673 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 77 126 IPR006456 -
Cme10g01673 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 76 127 IPR006456 -
Cme10g01673 298 Gene3D - 211 284 - -
Cme10g01673 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 22 284 - -
Cme10g01673 298 SUPERFAMILY Homeodomain-like 215 283 IPR009057 -
Cme10g01673 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 222 278 IPR006455 -
Cme10g01673 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01673 - - - csv:101218143 548.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01977 Cme-Chr4:27378003 Cme10g01673 Cme-Chr10:22954692 4.06E-55 dispersed
Cme07g01665 Cme-Chr7:22285844 Cme10g01673 Cme-Chr10:22954692 3.69E-44 dispersed
Cme08g00852 Cme-Chr8:5615815 Cme10g01673 Cme-Chr10:22954692 2.19E-53 dispersed
Cme09g00278 Cme-Chr9:2138970 Cme10g01673 Cme-Chr10:22954692 5.33E-50 dispersed
Cme10g00417 Cme-Chr10:2641879 Cme10g01673 Cme-Chr10:22954692 5.88E-46 dispersed
Cme10g01673 Cme-Chr10:22954692 Cme12g01805 Cme-Chr12:24517627 6.89E-39 dispersed
Cme10g01673 Cme-Chr10:22954692 Cme03g01952 Cme-Chr3:27478925 2.40E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1234 . Blo03g00280 Bda06g00184 . . . . . . . . . . . . . . . . . . . . . Cla11g00012 Cam11g0009 Cec11g0010 Cco11g0011 Clacu11g0158 Cmu11g0008 Cre11g0510 . . . . . . . . . . . . . . . Bma12g00035 . . . . . . . Cpe01g01712 . . . . . . . . . . . . . . . . . . Cme10g01673
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01827 . 46 234 ZF-HD Transcription Factor Family AT4G24660 50.3 5.4e-43 171.4
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT2G02540 55.6 1.1e-51 200.7
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT1G14440 54.5 7.1e-54 208.0
Cme04g01977 . 22 298 ZF-HD Transcription Factor Family AT5G15210 51.6 2.2e-51 199.5
Cme09g00278 . 66 263 ZF-HD Transcription Factor Family AT5G15210 60.1 4.7e-46 181.8
Cme04g01977 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.0 2.9e-63 239.2
Cme09g00278 . 16 265 ZF-HD Transcription Factor Family AT3G28920 59.8 2.9e-55 212.6
Cme04g01977 . 30 267 ZF-HD Transcription Factor Family AT5G39760 58.4 3.0e-50 196.1
Cme09g00278 . 24 276 ZF-HD Transcription Factor Family AT5G39760 53.7 6.2e-48 188.3
Cme09g00278 . 65 266 ZF-HD Transcription Factor Family AT1G69600 51.0 6.5e-47 184.5
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT2G02540 55.6 1.1e-51 200.7
Cme03g01827 . 46 234 ZF-HD Transcription Factor Family AT4G24660 50.3 5.4e-43 171.4
Cme04g01977 . 30 267 ZF-HD Transcription Factor Family AT5G39760 58.4 3.0e-50 196.1
Cme09g00278 . 24 276 ZF-HD Transcription Factor Family AT5G39760 53.7 6.2e-48 188.3
Cme09g00278 . 65 266 ZF-HD Transcription Factor Family AT1G69600 51.0 6.5e-47 184.5
Cme04g01977 . 22 298 ZF-HD Transcription Factor Family AT5G15210 51.6 2.2e-51 199.5
Cme09g00278 . 66 263 ZF-HD Transcription Factor Family AT5G15210 60.1 4.7e-46 181.8
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT1G14440 54.5 7.1e-54 208.0
Cme04g01977 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.0 2.9e-63 239.2
Cme09g00278 . 16 265 ZF-HD Transcription Factor Family AT3G28920 59.8 2.9e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42112 PF04770 ZF-HD_dimer 4.50E-29 No_clan Cme TF