Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01685 ATGTCCTTTTCAGCTGCTTCTAATCTTCCCTCAGGAGGACCCCATTCAGGGCCCTCTTCTGATGCACTGTATAGGGAATTATGGCATGCCTGTGCAGGTCCACTTGTCACCCTTCCTCGCCAAGATGAACGAGTTTACTACTTTCCTCAGGGTCACATGGAACAGCTGGAAGCCTCAATGCATCAAGGATTGGAGCAACAAATGCCTTCATTCAACCTTCCATCAAAAATACTTTGCAAAGTTGTGAATGTGGTTCTTCGGGCGGAATCTGACACCGATGAAGTTTATGCTCAGATAACTCTATTACCAGAAAGCAATCAAAATGAAGTAACAAGCCCAGATCCTCCCCTTCCTGAGCCTACAAGATGTAATGTCCACTCTTTTTGCAAGACGCTTACCGCTTCTGACACTAGCACTCATGGTGGTTTCTCTGTTCTTAGGAGGCATGCGGATGACTGTCTACCACCTCTGGATATGTCTCAGCAGCCACCGTGGCAAGAATTGGTTGCTACTGATTTACATGGGAGTCAATGGCATTTTAGGCACATTTTCCGAGGTCAACCGAGGCGTCATTTGCTAACAACTGGGTGGAGCGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTGCGTGTTGGCGTGAGAAGACTCATGAGACAGCTAAACAATATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTATTTCAACTGGAACACTTTTTTCTGTCTTTTACAAGCCAAGAACAAGCAGGTCTACATTTCTTGTCAGTCTGAACAAGTACCTTGAAGCTCAAAACCATAAGCTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTGCCTGAAAGAAGTTTTAGCGGAACAATTGTCGGTCTTGGAGATAATGCGTCACCTGGGTGGGCAAATTCTGAGTGGCGATCTTTAAAGGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAAGGTGTCTGCTTGGGAGTTGGAGCCGCTTGTTGCTTCTAACCCTCTAAGCTCTCAGCCTACACAGAGGAACAAGCGTCCACGGCCAACAGTTTTGCCTTCATCCTCACCAGATGCAACTGTACTTGGTGGGTGGAAACCTACAGTTGAATCTTCTGCTTTTTCATATACTGAGCCACAGCGCGCAAGGGACCTATATTCATCACCAAAGTTCAGCACTGCTGCTTCAAATTCTCTTGGTTTTAATGCGAATGGTGCTGTGTCCAGCAACACCTACTGGTGTAATACCAATAGGGTGGAAAATATTATGGACACTTCATCTCATGGAGCAAACAGGGAGCCTGTTGAAAAGAAACAGAACAGTAGAAATGGATGCAGGCTCTTTGGGATTCAGCTTCTTGGAAATTCTAATGTGGATGAAGCGTCTCCAGTTTCAACACCTAAAATGGTCGGTGAGGATAGGCTGGTTTCACCTGTAGACTCTGAGTTTGAGCAGCATTCTGAACCATCAAACATTCACCGATCAGATATTCCCTCCATAAGCTGTGATGCTGATAAATCATGCTTGATTTCCCCATTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGGAGGGCTGTAGATTTAACCCGGTTCAATCAATATGATGATCTACTTAGGAAACTGGAAGAGATGTTTGACATAGAGGGGGAGCTTTGTGGCTCTCTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAATGAGTTCTGCAGCATGGTAAGGAAGATATTCATTTACACAACAGAAGAAGTGAAGAGACTTTCGCCCAAAATAAAACTCCCACTGGGTGGAGAAGCAAAGCTTAGCAAGCCAGATTCCGATATGATTGCCAACCACACGGAGGACCAATCGTCCATCGTGGGATCAGACTGCTGA 2028 45.12 MSFSAASNLPSGGPHSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAESDTDEVYAQITLLPESNQNEVTSPDPPLPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGSQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLKVQWDEPSSILRPDKVSAWELEPLVASNPLSSQPTQRNKRPRPTVLPSSSPDATVLGGWKPTVESSAFSYTEPQRARDLYSSPKFSTAASNSLGFNANGAVSSNTYWCNTNRVENIMDTSSHGANREPVEKKQNSRNGCRLFGIQLLGNSNVDEASPVSTPKMVGEDRLVSPVDSEFEQHSEPSNIHRSDIPSISCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSLKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGEAKLSKPDSDMIANHTEDQSSIVGSDC 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23353579 23363662 + MELO3C022932.2.1 Cme10g01685 340571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01685 675 SMART B3_2 128 230 IPR003340 GO:0003677
Cme10g01685 675 MobiDBLite consensus disorder prediction 362 386 - -
Cme10g01685 675 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Cme10g01685 675 SUPERFAMILY CAD & PB1 domains 552 627 - -
Cme10g01685 675 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Cme10g01685 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 651 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme10g01685 675 Pfam Auxin response factor 254 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme10g01685 675 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Cme10g01685 675 CDD B3_DNA 126 228 IPR003340 GO:0003677
Cme10g01685 675 Gene3D - 291 364 - -
Cme10g01685 675 MobiDBLite consensus disorder prediction 362 393 - -
Cme10g01685 675 Pfam AUX/IAA family 551 640 IPR033389 -
Cme10g01685 675 Gene3D - 125 230 IPR015300 -
Cme10g01685 675 ProSiteProfiles PB1 domain profile. 550 643 IPR000270 GO:0005515
Cme10g01685 675 MobiDBLite consensus disorder prediction 652 675 - -
Cme10g01685 675 PANTHER AUXIN RESPONSE FACTOR 9 9 651 - -
Cme10g01685 675 Gene3D - 545 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02113 Cme-Chr2:26881616 Cme10g01685 Cme-Chr10:23353579 2.75E-41 dispersed
Cme09g01853 Cme-Chr9:22743745 Cme10g01685 Cme-Chr10:23353579 0 dispersed
Cme10g01685 Cme-Chr10:23353579 Cme12g01152 Cme-Chr12:19599255 2.15E-14 dispersed
Cme10g01685 Cme-Chr10:23353579 Cme08g00111 Cme-Chr8:821892 2.15E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42114 PF02309 AUX_IAA 1.80E-11 CL0072 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01685 K14486 - csv:101204612 1329.31