Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01713 ATGACAAGTACACGGATATTTATGACGGGAGGAAAAGGGGATACCGGAAATGGGATTGAGGCAGTGGCTGGATCAAATAATCCAAGACAGGAGACGGCAGCTCCACCACCGGAAGCGGGTGGTCCGGCGGGTTCTGCAGCGGAGGCAGGGAAGAAGAAGAGGGGGAGACCGAGGAAGTATGGGCCGGATGGGAAGTTGAATGTGGCGGCACTGTCACCGAAGCCGATATCGGCGTCGGCACCGGCACCGACGGCAGTTATTGATTTCTCGGCGGAAAAACGTGGAAAAGTGCGGCCGGCGAGTTCCTTGACCAAAACCAAATATGAAGTCGAGAGTTTAGGAGAATGGGTACCTTGTTCGGTTGGCGCCAATTTTACGCCCCATATCATCACCGTAAGCAGTGGCGAGGACGTAACGATGAAGGTTCTCTCATTTTCTCAACAAGGACCTCGAGCAATCTGCATTCTGTCTGCTAATGGCGTGATTTCGAGCGTGACGCTTCGTCAACCCGACTCCTCCGGTGGAACTTTAACATATGAGGGTCGTTTTGAAATATTGTCATTGTCGGGATCGTTCATGCCGAGTGACAGTGTAGGAACAAAGAGCAGGATTGGTGGAATGAGCGTCTCCTTAGCAAGCCCAGACGGACGAGTTGTTGGTGGTGGAGTTGCTGGTTTGTTAGTAGCTGCAAGTCCAGTTCAAGTGGTTGTAGGAAGCTTTATATCTGGTAACCAAACCGAGCAAAAGCCAAAGAAGTCAAGACACGACGTTGTATTACCGGTTTCTACTTTTCCAATCTCTAGTGTTGAACCCAAATCATTCAAGACCACGACGACGACATCTTCCTTTCGTGCTGAAACATGGTCACCTAATATTCACAACATTGGCATTGCTTCTCTGCCGCCTCAACGGCCTCCAAAGGAAACCCAATTAGAGAAATATTCACTAGTAGAAAAAGGGCCTACAATGGCAGTTAAATGCTATCATTAA 990 49.39 MTSTRIFMTGGKGDTGNGIEAVAGSNNPRQETAAPPPEAGGPAGSAAEAGKKKRGRPRKYGPDGKLNVAALSPKPISASAPAPTAVIDFSAEKRGKVRPASSLTKTKYEVESLGEWVPCSVGANFTPHIITVSSGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSVGTKSRIGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFISGNQTEQKPKKSRHDVVLPVSTFPISSVEPKSFKTTTTTSSFRAETWSPNIHNIGIASLPPQRPPKETQLEKYSLVEKGPTMAVKCYH 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23718509 23721408 - MELO3C022955.2.1 Cme10g01713 340599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01713 329 ProSiteProfiles PPC domain profile profile. 122 267 IPR005175 -
Cme10g01713 329 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 282 IPR039605 GO:0003680
Cme10g01713 329 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 28 282 - -
Cme10g01713 329 CDD DUF296 126 217 IPR005175 -
Cme10g01713 329 SUPERFAMILY AF0104/ALDC/Ptd012-like 124 246 - -
Cme10g01713 329 MobiDBLite consensus disorder prediction 1 65 - -
Cme10g01713 329 Pfam Plants and Prokaryotes Conserved (PCC) domain 127 240 IPR005175 -
Cme10g01713 329 Gene3D - 127 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00921 Cme-Chr6:6454924 Cme10g01713 Cme-Chr10:23718509 3.21E-73 dispersed
Cme09g01755 Cme-Chr9:22028676 Cme10g01713 Cme-Chr10:23718509 9.13E-51 dispersed
Cme10g01713 Cme-Chr10:23718509 Cme11g02151 Cme-Chr11:28950150 3.61E-58 dispersed
Cme10g01713 Cme-Chr10:23718509 Cme09g01675 Cme-Chr9:21436169 1.39E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01713 - - csv:116403748 460.685