Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g01766 ATCCTCCTTCTCCTCCTCTTCTTCTTCCTTTCTTTTCCTTTACTGCTACATTCATCCCCTGTTTCTTCGCTTCCCCACAATGAAGGACGAGCGCTTATGTCAATCAAAGCCTCGTTTAGCAATGTAGCTAATGTGTTGCTTGACTGGGATGATGATCATAACCATGATTTCTGTTCATGGCGTGGGGTTTTCTGTGACAATGTTAGCCTTTCAGTTGCTGCATTGAACTTGTCCAACTTGAATCTGGGGGGAGAGATCTCACCATCCATTGGAGATTTGAGGAACTTACAGTCAATTGATTTTCAAGGGAATAAACTGACGGGCCAAATCCCTGATGAGATTGGTAACTGTGGTCTTCTTGTCCATTTGGATTTGTCTGATAATTTGCTCTATGGAGACATTCCCTTCACGGTTTCAAAGCTGAAGCAGCTCGAGTTTCTGAATATGAAGAACAATCAATTGACCGGTCCAATCCCTTCGACCTTTACACAGATTCCCAATCTGAAAACTCTAGATCTTGCAAGAAACCAGCTTACTGGGGAGATACCTAGATTAATCTATTGGAATGAAGTACTGCAATATCTTGGATTACGGGGGAACTTTTTGACGGGGTCGTTGTCCTCGGATATGTGTCAATTGACTGGCTTGTGGTATTTTGATGTAAGGGGCAACAATTTGACTGGCACGATACCTGATAGCATAGGCAACTGTACGAGTTTTGAAATTCTGGATATATCTTACAATCAGATCTCAGGAGAGATTCCATACAACATTGGATTTCTGCAAGTGGCCACTTTATCGTTACAGGGAAATAGGTTGACTGGTAAGATTCCTGACGTCATTGGATTGATGCAGGCCCTTGCCGTTCTGGATTTGAGTGAGAATGAGCTTGAAGGGCCAATACCACCAATACTTGGCAATTTGTCCTACACAGGAAAATTGTATCTACATGGAAACAAGTTGACTGGGCCAATTCCTCCCGAGCTGGGCAATATGTCGAAGCTTAGCTACTTGCAACTAAATGATAACCAGTTGGTTGGTACAATCCCTTCTGAACTAGGGAAATTGGATCAGTTGTTTGAACTAAATCTTGCTAATAATTATCTTGAAGGACCTATCCCTCACAACATCAGTTCTTGCACTGCATTGAATCAATTCAATGTGCATGGAAACAATCTTAACGGATCAATTCCTTTGGGTTTCCAAAATCTGGAGAGCTTGACTTATTTGAACCTTTCAGCTAACAACTTCAAAGGCAGGATACCTGTTGAGCTGGGACGCATAGTAAACCTTGATACATTGGATCTATCTTGCAATTACTTCTTGGGTCCTGTTCCTCCTTCTATCGGTGATTTAGAGCACCTTCTTAGCCTCAACTTGAGCAATAACCGACTTGTTGGGCCATTGCCAGCAGAATTTGGGAATCTCCGAAGTGTTCAGATGATTGATATGTCATTCAACAACCTTTCGGGTAGCATACCCATGGAGTTGGGTCAACTGCAAAATATTATCTCCCTCATTTTGAACAACAACCATTTTCAAGGGAAAATACCTGATCGGCTGACTAATTGCTTTAGTCTTGCCAATTTGAACTTGTCATACAACAACTTATCTGGTACCTTACCTCCCATGAAAAATTTCTCCCGCTTCGAACCAAATAGCTTTATTGGTAATCCACTGCTGTGTGGGAACTGGCTGGGTTCGATCTGTGGGCCTTACATGGAGAAATCTAGAGCAATGTTGTCTCGAACATTGGTTGTTTGTATGTCATTTGGATTCATAATACTGTTGTCAATGGTTATAATTGCCGTGTACAAGTCGAGTCCATCGAAGCAATTAGTGAAGGGTTCTGGCAAGACTGGGCAAGGTCCTCCAAATCTTGTGGTACTTCATATGGATATGGCTGTTCACACCTTCGAGGACATTATGAGAAGTACTGAGAATCTAAGCGAGAAATACATTATTGGTTATGGAGCTTCGAGCACTGTGTACAAATGTTCACTGAAAAATTCCCGACCTATTGCAATTAAGCGACTTTACAATCACTATGCACACAATTTACGGGAGTTTGAGACTGAACTCGGAACTATTGGTAGTATCCGACATAGAAATCTTGTTAGTCTTCATGGTTATTCACTATCTCCCTGTGGGAAACTCCTCTTCTATGACTACATGGAAAATGGATCACTCTGGGATCTTCTTCATGGTAAGAAGGTTAAACTAGATTGGGAAGCGCGTCTAAAGATTGCGGTTGGAGCTGCTCAAGGGCTTGCGTACCTTCACCATGATTGTAACCCTCGAATCATTCACCGAGATGTCAAGTCTTCAAATATTCTACTGGATGAAAATTTTGAGGCCCATCTTTCTGATTTTGGGATTGCCAAATGTATCCCAACTGCCAAAACGCACGCATCGACTTTTGTGCTTGGAACAATTGGTTACATTGATCCAGAGTATGCTCGGACCTCCCGACTTAATGAAAAGTCTGATGTTTATAGCTTTGGCATTGTTCTTCTGGAACTACTGACTGGGAAGAAAGCTGTAGATGACGAGTCCAACTTGCATCAGCTGATATTGTCCAAGATCGATAATAATACCGTGATGGAAGCTGTTGATCCCGAGGTTTCGGTCACCTGCATTGATTTAGCCCATGTTAGAAAAACGTTCCAGCTTGCTCTCCTCTGCACAAAACACAATTCCTCTGAAAGGCCAACCATGCACGAAGTTTCACGAGTCTTGATCTCCCTCCAGCCAGCACAACCTACTGTTAAACGAAGTTCATTCCCCACGAAAACGTTGGATTACGCACAATACGTGATTGAAAAGGGTCAGCATCGAAAGTTGAAAGGAGGGCAGGAGGAGCAGCAGAAGTCAGATGTGAATACTTCGGATGCTCGGTGGTTTGTTCAGTTTGGGGAAGTTACGTCCGAACAACACAGTTTGAATCAATAA 2952 42.55 ILLLLLFFFLSFPLLLHSSPVSSLPHNEGRALMSIKASFSNVANVLLDWDDDHNHDFCSWRGVFCDNVSLSVAALNLSNLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGLLVHLDLSDNLLYGDIPFTVSKLKQLEFLNMKNNQLTGPIPSTFTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNFLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPDVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLVGTIPSELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNNLNGSIPLGFQNLESLTYLNLSANNFKGRIPVELGRIVNLDTLDLSCNYFLGPVPPSIGDLEHLLSLNLSNNRLVGPLPAEFGNLRSVQMIDMSFNNLSGSIPMELGQLQNIISLILNNNHFQGKIPDRLTNCFSLANLNLSYNNLSGTLPPMKNFSRFEPNSFIGNPLLCGNWLGSICGPYMEKSRAMLSRTLVVCMSFGFIILLSMVIIAVYKSSPSKQLVKGSGKTGQGPPNLVVLHMDMAVHTFEDIMRSTENLSEKYIIGYGASSTVYKCSLKNSRPIAIKRLYNHYAHNLREFETELGTIGSIRHRNLVSLHGYSLSPCGKLLFYDYMENGSLWDLLHGKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKCIPTAKTHASTFVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDDESNLHQLILSKIDNNTVMEAVDPEVSVTCIDLAHVRKTFQLALLCTKHNSSERPTMHEVSRVLISLQPAQPTVKRSSFPTKTLDYAQYVIEKGQHRKLKGGQEEQQKSDVNTSDARWFVQFGEVTSEQHSLNQ 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25121562 25127293 - MELO3C026677.2.1 Cme10g01766 340652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g01766 983 Pfam Leucine rich repeat 430 489 IPR001611 GO:0005515
Cme10g01766 983 SUPERFAMILY L domain-like 26 319 - -
Cme10g01766 983 Gene3D Transferase(Phosphotransferase) domain 1 725 932 - -
Cme10g01766 983 ProSiteProfiles Leucine-rich repeat profile. 167 189 IPR001611 GO:0005515
Cme10g01766 983 Gene3D Ribonuclease Inhibitor 25 189 IPR032675 -
Cme10g01766 983 SUPERFAMILY L domain-like 307 563 - -
Cme10g01766 983 Gene3D Phosphorylase Kinase; domain 1 620 724 - -
Cme10g01766 983 ProSitePatterns Protein kinases ATP-binding region signature. 655 677 IPR017441 GO:0005524
Cme10g01766 983 Pfam Leucine Rich Repeat 167 185 IPR001611 GO:0005515
Cme10g01766 983 Pfam Protein kinase domain 652 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g01766 983 Gene3D Ribonuclease Inhibitor 190 300 IPR032675 -
Cme10g01766 983 Gene3D Ribonuclease Inhibitor 301 572 IPR032675 -
Cme10g01766 983 SUPERFAMILY Protein kinase-like (PK-like) 626 913 IPR011009 -
Cme10g01766 983 ProSiteProfiles Protein kinase domain profile. 649 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g01766 983 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Cme10g01766 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Cme10g01766 983 SMART serkin_6 649 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g01766 983 SMART LRR_typ_2 165 189 IPR003591 -
Cme10g01766 983 SMART LRR_typ_2 93 117 IPR003591 -
Cme10g01766 983 SMART LRR_typ_2 332 356 IPR003591 -
Cme10g01766 983 SMART LRR_typ_2 284 308 IPR003591 -
Cme10g01766 983 SMART LRR_typ_2 452 475 IPR003591 -
Cme10g01766 983 SMART LRR_typ_2 141 164 IPR003591 -
Cme10g01766 983 SMART LRR_typ_2 404 428 IPR003591 -
Cme10g01766 983 SMART LRR_typ_2 500 524 IPR003591 -
Cme10g01766 983 SMART LRR_typ_2 213 237 IPR003591 -
Cme10g01766 983 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 19 954 - -
Cme10g01766 983 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 954 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00358 Cme-Chr2:2949130 Cme10g01766 Cme-Chr10:25121562 2.67E-06 dispersed
Cme04g00565 Cme-Chr4:5090590 Cme10g01766 Cme-Chr10:25121562 5.37E-23 dispersed
Cme06g02114 Cme-Chr6:26735196 Cme10g01766 Cme-Chr10:25121562 6.24E-07 dispersed
Cme07g00174 Cme-Chr7:1142574 Cme10g01766 Cme-Chr10:25121562 0 dispersed
Cme10g01766 Cme-Chr10:25121562 Cme07g01827 Cme-Chr7:23749651 9.28E-166 dispersed
Cme10g01766 Cme-Chr10:25121562 Cme05g00654 Cme-Chr5:7055603 8.35E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65218 PF00069 Pkinase 7.20E-41 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g01766 K20718 - csv:101213139 1830.07