Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00012 ATGGGAACACAGATTCTAATGCTCATTCTCATTCTCATTCGGATTCCACCATCAATTGGCAGAATGAAGAAGCAACTCATCCTCATCACCATCTTATTCTCTCTCCCTCTTATTGCTTTTTCTCAGGATTTTTCACAATCCCACCTTGCATTTTCATTCTCAATGCTTTGTGGGGCCCTTGCACTTGCACTACACATTTATTTTTCCTCTTATCATTCAGTTTCCCATGATTGGATTAGTTTATTTAACATTGTCTCCTGCTTCTGTTTCTCTAGCATGATCCATTCTTCCTTGTTTGCAGCTTTTGTAGTCTCAGAAGCCATGCCTCATTCTAAAGGAGATACTCCCATGTTTTCAATGTTCTGTAGATGGAACCCCTTAAGATTGATCATTCAGGGGCTGCTATTGTTCTCATTGTTGAGGTTGAATTATGCGTCAACAGATCCTGATGTGGAAGGAGAAGCTTTGGTTGATTTGTTAGGGGCACTGAATGATTCCAATCATCAGATAACTGACTGGAATTACCATCTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGTCGAAATGGAAATGTCATATCCTTGAGCTTGGGTTCAGTAGGCTTTTCAGGATCGCTTTCTCCCTCAATTACCAAACTGAAGTATTTGGCCAGCCTGGATTTGCAGAACAATAAAATAGCCGGTGTTCTACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGGCCTATACCTGTGGCTTGGGGTCGACTTGTCGGTCTAAAGCATCTGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCGCAGTTCTTTTCAATTCCAATGTTCAACTTTTCAGGAACTGGTTTACCTTGTGGATTTAGGTTGGATAAACCTTGTGTTTCGACATCTCCACGTAGAGCTTCTGCAAAGAATTCCAAGTTTGGGGTAGTGGCAAGTACCGCAAGCTGTGGAGGTTTCATACTTCTGTCGATTGGTGCCTTCTTTGCTTATAGATGCTTCTACATGCATAAGCTTAAGGATTCTATGTTTGTTGATGTTGCTGATGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCATTGCGGGAAATCCAACTTGCTACCGCTAACTTTAATGAAGCGAACATCATTGGCCAAGGAGGCTTTGGAAAAGTATATAAAGGCATCCTCTCAGATGCCTCCAAGGTGGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGCGGGAAGGCTGCATTCCTAGGAGAAGTTGAACTAATAAGCGTTGCGGTGCATAGAAATCTCCTACGGTTGATCGGGTTTTGCATAACCACATCTGAGAGAATCCTTGTTTATCCATTCATGCAGAATCTTAGTGTGGCACATCACTTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGAATGGGCCACGAGGAAACGAATTGCTTTTGGTGCAGCTCATGGTTTGGAGTATTTGCACGAGCACTGTAATCCTAAGATCATACATCGCGATTTGAAGGCTGCGAATATCTTATTAGATGATGACTTTGAAGCTGTTCTTGGAGATTTTGGGCTGGCTAAGCTAGTTGATACTAAAGTGACTCACATTACCACTCAAGTGCGTGGTACGATGGGCCACATTGCCCCAGAATATCTGTCCACTGGAAAGTCATCTGAAAAGACAGATGTTTTTGGATATGGTATCACCCTTCTTGAACTTGTCACTGGCCAGCGAGCAATAGATTTCTCCCGTCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGCTGCAGAGGGAGAATAGGCTTGAAGATGTGGTGGACAAGAACTTAAAGAGCTATAACGAGAAAGAAGTCGAAAATATAGTTCAGGTGGCACTGCTTTGCACTCAAAGTTCACCGGAGGACCGGCCAACAATGGCTGAAGTTGTGAATCTGCTACATGGAGAAGGACTGGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGTAAGAGATCAGGAAGTGTCCCTCTTGTGTCACCAATTTGTTTGGGGTGAAGAATCAAGTCATGATCAAGAAGCCATACAATTGTCTAAAGCCAGATAG 2136 42.51 MGTQILMLILILIRIPPSIGRMKKQLILITILFSLPLIAFSQDFSQSHLAFSFSMLCGALALALHIYFSSYHSVSHDWISLFNIVSCFCFSSMIHSSLFAAFVVSEAMPHSKGDTPMFSMFCRWNPLRLIIQGLLLFSLLRLNYASTDPDVEGEALVDLLGALNDSNHQITDWNYHLVSPCFSWSHITCRNGNVISLSLGSVGFSGSLSPSITKLKYLASLDLQNNKIAGVLPDYLANMTHLQNLNLANNNFNGPIPVAWGRLVGLKHLDLSDNNLTGEVPAQFFSIPMFNFSGTGLPCGFRLDKPCVSTSPRRASAKNSKFGVVASTASCGGFILLSIGAFFAYRCFYMHKLKDSMFVDVADEDECKLCFGQIRRFSLREIQLATANFNEANIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGKAAFLGEVELISVAVHRNLLRLIGFCITTSERILVYPFMQNLSVAHHLRDLKPGERSLEWATRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLKSYNEKEVENIVQVALLCTQSSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHQFVWGEESSHDQEAIQLSKAR 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 141851 148743 - MELO3C023200.2.1 Cme11g00012 340675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00012 711 SMART serkin_6 389 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00012 711 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 134 711 - -
Cme11g00012 711 PANTHER LRR RECEPTOR-LIKE KINASE 134 711 - -
Cme11g00012 711 SUPERFAMILY Protein kinase-like (PK-like) 370 662 IPR011009 -
Cme11g00012 711 ProSitePatterns Protein kinases ATP-binding region signature. 395 417 IPR017441 GO:0005524
Cme11g00012 711 Pfam Leucine rich repeat 218 276 IPR001611 GO:0005515
Cme11g00012 711 Gene3D Transferase(Phosphotransferase) domain 1 466 682 - -
Cme11g00012 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672|GO:0006468
Cme11g00012 711 Gene3D Phosphorylase Kinase; domain 1 358 465 - -
Cme11g00012 711 Pfam Leucine rich repeat N-terminal domain 151 189 IPR013210 -
Cme11g00012 711 SUPERFAMILY L domain-like 153 288 - -
Cme11g00012 711 Pfam Protein kinase domain 390 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00012 711 ProSiteProfiles Protein kinase domain profile. 389 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00012 711 Gene3D Ribonuclease Inhibitor 149 307 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01776 Cme-Chr7:23290559 Cme11g00012 Cme-Chr11:141851 0 dispersed
Cme07g01777 Cme-Chr7:23303566 Cme11g00012 Cme-Chr11:141851 0 dispersed
Cme11g00012 Cme-Chr11:141851 Cme07g01730 Cme-Chr7:22801598 4.00E-180 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65219 PF00069 Pkinase 4.20E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00012 - - bhj:120088289 1191.02