Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00012 | ATGGGAACACAGATTCTAATGCTCATTCTCATTCTCATTCGGATTCCACCATCAATTGGCAGAATGAAGAAGCAACTCATCCTCATCACCATCTTATTCTCTCTCCCTCTTATTGCTTTTTCTCAGGATTTTTCACAATCCCACCTTGCATTTTCATTCTCAATGCTTTGTGGGGCCCTTGCACTTGCACTACACATTTATTTTTCCTCTTATCATTCAGTTTCCCATGATTGGATTAGTTTATTTAACATTGTCTCCTGCTTCTGTTTCTCTAGCATGATCCATTCTTCCTTGTTTGCAGCTTTTGTAGTCTCAGAAGCCATGCCTCATTCTAAAGGAGATACTCCCATGTTTTCAATGTTCTGTAGATGGAACCCCTTAAGATTGATCATTCAGGGGCTGCTATTGTTCTCATTGTTGAGGTTGAATTATGCGTCAACAGATCCTGATGTGGAAGGAGAAGCTTTGGTTGATTTGTTAGGGGCACTGAATGATTCCAATCATCAGATAACTGACTGGAATTACCATCTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGTCGAAATGGAAATGTCATATCCTTGAGCTTGGGTTCAGTAGGCTTTTCAGGATCGCTTTCTCCCTCAATTACCAAACTGAAGTATTTGGCCAGCCTGGATTTGCAGAACAATAAAATAGCCGGTGTTCTACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGGCCTATACCTGTGGCTTGGGGTCGACTTGTCGGTCTAAAGCATCTGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCGCAGTTCTTTTCAATTCCAATGTTCAACTTTTCAGGAACTGGTTTACCTTGTGGATTTAGGTTGGATAAACCTTGTGTTTCGACATCTCCACGTAGAGCTTCTGCAAAGAATTCCAAGTTTGGGGTAGTGGCAAGTACCGCAAGCTGTGGAGGTTTCATACTTCTGTCGATTGGTGCCTTCTTTGCTTATAGATGCTTCTACATGCATAAGCTTAAGGATTCTATGTTTGTTGATGTTGCTGATGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCATTGCGGGAAATCCAACTTGCTACCGCTAACTTTAATGAAGCGAACATCATTGGCCAAGGAGGCTTTGGAAAAGTATATAAAGGCATCCTCTCAGATGCCTCCAAGGTGGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGCGGGAAGGCTGCATTCCTAGGAGAAGTTGAACTAATAAGCGTTGCGGTGCATAGAAATCTCCTACGGTTGATCGGGTTTTGCATAACCACATCTGAGAGAATCCTTGTTTATCCATTCATGCAGAATCTTAGTGTGGCACATCACTTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGAATGGGCCACGAGGAAACGAATTGCTTTTGGTGCAGCTCATGGTTTGGAGTATTTGCACGAGCACTGTAATCCTAAGATCATACATCGCGATTTGAAGGCTGCGAATATCTTATTAGATGATGACTTTGAAGCTGTTCTTGGAGATTTTGGGCTGGCTAAGCTAGTTGATACTAAAGTGACTCACATTACCACTCAAGTGCGTGGTACGATGGGCCACATTGCCCCAGAATATCTGTCCACTGGAAAGTCATCTGAAAAGACAGATGTTTTTGGATATGGTATCACCCTTCTTGAACTTGTCACTGGCCAGCGAGCAATAGATTTCTCCCGTCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGCTGCAGAGGGAGAATAGGCTTGAAGATGTGGTGGACAAGAACTTAAAGAGCTATAACGAGAAAGAAGTCGAAAATATAGTTCAGGTGGCACTGCTTTGCACTCAAAGTTCACCGGAGGACCGGCCAACAATGGCTGAAGTTGTGAATCTGCTACATGGAGAAGGACTGGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGTAAGAGATCAGGAAGTGTCCCTCTTGTGTCACCAATTTGTTTGGGGTGAAGAATCAAGTCATGATCAAGAAGCCATACAATTGTCTAAAGCCAGATAG | 2136 | 42.51 | MGTQILMLILILIRIPPSIGRMKKQLILITILFSLPLIAFSQDFSQSHLAFSFSMLCGALALALHIYFSSYHSVSHDWISLFNIVSCFCFSSMIHSSLFAAFVVSEAMPHSKGDTPMFSMFCRWNPLRLIIQGLLLFSLLRLNYASTDPDVEGEALVDLLGALNDSNHQITDWNYHLVSPCFSWSHITCRNGNVISLSLGSVGFSGSLSPSITKLKYLASLDLQNNKIAGVLPDYLANMTHLQNLNLANNNFNGPIPVAWGRLVGLKHLDLSDNNLTGEVPAQFFSIPMFNFSGTGLPCGFRLDKPCVSTSPRRASAKNSKFGVVASTASCGGFILLSIGAFFAYRCFYMHKLKDSMFVDVADEDECKLCFGQIRRFSLREIQLATANFNEANIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGKAAFLGEVELISVAVHRNLLRLIGFCITTSERILVYPFMQNLSVAHHLRDLKPGERSLEWATRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLKSYNEKEVENIVQVALLCTQSSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHQFVWGEESSHDQEAIQLSKAR | 711 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 141851 | 148743 | - | MELO3C023200.2.1 | Cme11g00012 | 340675 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00012 | 711 | SMART | serkin_6 | 389 | 662 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g00012 | 711 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 134 | 711 | - | - | |
Cme11g00012 | 711 | PANTHER | LRR RECEPTOR-LIKE KINASE | 134 | 711 | - | - | |
Cme11g00012 | 711 | SUPERFAMILY | Protein kinase-like (PK-like) | 370 | 662 | IPR011009 | - | |
Cme11g00012 | 711 | ProSitePatterns | Protein kinases ATP-binding region signature. | 395 | 417 | IPR017441 | GO:0005524 | |
Cme11g00012 | 711 | Pfam | Leucine rich repeat | 218 | 276 | IPR001611 | GO:0005515 | |
Cme11g00012 | 711 | Gene3D | Transferase(Phosphotransferase) domain 1 | 466 | 682 | - | - | |
Cme11g00012 | 711 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 512 | 524 | IPR008271 | GO:0004672|GO:0006468 | |
Cme11g00012 | 711 | Gene3D | Phosphorylase Kinase; domain 1 | 358 | 465 | - | - | |
Cme11g00012 | 711 | Pfam | Leucine rich repeat N-terminal domain | 151 | 189 | IPR013210 | - | |
Cme11g00012 | 711 | SUPERFAMILY | L domain-like | 153 | 288 | - | - | |
Cme11g00012 | 711 | Pfam | Protein kinase domain | 390 | 660 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g00012 | 711 | ProSiteProfiles | Protein kinase domain profile. | 389 | 675 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g00012 | 711 | Gene3D | Ribonuclease Inhibitor | 149 | 307 | IPR032675 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme07g01776 | Cme-Chr7:23290559 | Cme11g00012 | Cme-Chr11:141851 | 0 | dispersed | |
Cme07g01777 | Cme-Chr7:23303566 | Cme11g00012 | Cme-Chr11:141851 | 0 | dispersed | |
Cme11g00012 | Cme-Chr11:141851 | Cme07g01730 | Cme-Chr7:22801598 | 4.00E-180 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65219 | PF00069 | Pkinase | 4.20E-44 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00012 | - | - | bhj:120088289 | 1191.02 |