Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00032 ATGTTGCTGCTCGTCGACCCCGCCGCTCCCCCCGGCGCCTCCGTCGTCGTCGTCGGGGTCAAAATGGATTCCCACAGTCGGGAATTGCTCACTTGGGCTCTCGTTAAAGTCGCTCAGCCTGGGGATTCTGTTATTGCTCTTCATGTCCTTGATTCCGCTGCTGTTATAGTTCCTGAAGGGAAATCTACTTTGCTTTCTCTTGTAAAGTCGTTTGACTCTGTGCTGTCCGCTTATGAAGGATTCTGCAACCTGAAACAGGTTGAATTGAAGCTCAAGGTCTGCCGAGGCTCGCCGGTTAGGAAAGTCATTAGACGGGAAGTGGATTCTTACGAGGAGGCTTCTCTAATTCTTGGTACTTCCAAAACTCACCATAGAATCCGTTCTTCGGCCTCGGTTGCTAAGTACTGCGCTAGAAAATTGTCGAGCAGATTCACTGTTTTAGCTGTTAATAATGGCAAAGTTATTTTCCAGAGATTAGCGACTTTCCCAAATAAAGGCCAGTCTCCAGACAAGTATGGGGACAAGAATTGTGCCGCCTTTGTAGAAGTAACTAATGAAACAAAAGCTGTTGGGTTGGCTTCGAATTTTATCGATAGTCATCGTTGCTTACAGAAATCTGACTCTGGTTGTAATGATAAAACGGAGAGGGACTGTGTTGAGCGTGCTCCATCTTCACTTGAACGGAACGATTCGGGAATTGATTTGGTGGATGAGTTACCTGAGGACAATGATGTGGGGAATTCGTTGGCTTTGGTACCATTTCATAAGCCTCGGGAAAATTTGAAGTCGAATTCCATTGTGTGTCGAGAATCGTCCCACTGGAAATCAAGTTGGCCGCTTCTAAGACGAATATTTTTGTCCAAGCACCAGGCAGAGAAATCTTCAAAGAAGTTTTCTGTGTTCCAAGGTGTATTGCACATACCAAACTTCCAGTCATCCTCCGCTTTGGTTTATCCAGATCAGAAACAGAACTGTTCTGACCAGGATCAGGGTTCCACCATTGATGGAGAGTGTGGTGCAATGGTGCCATATGGGTCCAGCCACATCTTGGAAAGCGTTCCCAAAGAGGTATTGGATTTGAAGGATAAATACTCATCCACCTGCAGATTGTTTACTTATGAGGAACTTTCGTCTGCAACTTCTAATTTTATGCCTGAGAACCTGGTTGGTAGAGGAGGTAGTAGCTATGTTTACCGAGGGCTTCTTCCCGATGGCCAGGAAATTGCTGTCAAAATTTTGAAGCCATCTGAGAATGTGCTAAAGGAGTTTGTTCAGGAAGTTGGGATCATTGCAACTTCAAGTCATAAGAATATTATATCTTTAATAGGTTGTAAGAAAGATGTGGAATCATTTGGTTGGCAAGAGAGGTTTAAGGTTGCAGTTGGCATTGCTGAGGCACTAGACTATCTGCACAATTGCAGGGAGGAACCTGTGGTACACCGGGATGTGAAGTCCTCTAACATTCTGCTTTCAGAGAATTTTGAACCACAGCTTTCCGATTTTGGGCTTGCTAGTTGGGCATCATCGTGCTTTCAGATCACTTGTACTGATGTAGCTGGAACGTTTGGTTACTTGGCACCTGAGTATTTCATGCACGGCAAAGTGAGTGACAAAATCGACGTCTACGCTTTTGGTGTTGTACTCCTTGAACTACTTTCTGGCAGAAAACCAATCAGCAACAATTGTCCCAAGGGGCAGGAAAGCCTTGTCATGTGGGCAAAGCCAATTTTGTCAGAAGGCAAAGTTTCACAATTACTAGATCCAAGCCTAGGCAGCGACTACAACCACGATCAAATAGGTCGAATGATTTTGGCCGCTACCCTTTGTATTAGACGAGCACCAAGACTCCGCCCTCAAATCAGCCTGATACTGAAACTTCTCCAAGGTGACGAGGAAATAACAACATGGGCAAGACAACAAATTGATGAAACAGATGAGTTGGATGCGAGTGACGGAGAACCTCTACCTACTAACATCCAATCACACCTTAACCTGGCGTTGCTTGGCTTGGAGGATGACTCACTTTCAGTTGGCAGTGGAATTCAAAGCATTTCCATAGAGGACTACTTGCAGGGCAGATGCAGCCGCTCTTCAAGCTTTAACTAG 2106 45.3 MLLLVDPAAPPGASVVVVGVKMDSHSRELLTWALVKVAQPGDSVIALHVLDSAAVIVPEGKSTLLSLVKSFDSVLSAYEGFCNLKQVELKLKVCRGSPVRKVIRREVDSYEEASLILGTSKTHHRIRSSASVAKYCARKLSSRFTVLAVNNGKVIFQRLATFPNKGQSPDKYGDKNCAAFVEVTNETKAVGLASNFIDSHRCLQKSDSGCNDKTERDCVERAPSSLERNDSGIDLVDELPEDNDVGNSLALVPFHKPRENLKSNSIVCRESSHWKSSWPLLRRIFLSKHQAEKSSKKFSVFQGVLHIPNFQSSSALVYPDQKQNCSDQDQGSTIDGECGAMVPYGSSHILESVPKEVLDLKDKYSSTCRLFTYEELSSATSNFMPENLVGRGGSSYVYRGLLPDGQEIAVKILKPSENVLKEFVQEVGIIATSSHKNIISLIGCKKDVESFGWQERFKVAVGIAEALDYLHNCREEPVVHRDVKSSNILLSENFEPQLSDFGLASWASSCFQITCTDVAGTFGYLAPEYFMHGKVSDKIDVYAFGVVLLELLSGRKPISNNCPKGQESLVMWAKPILSEGKVSQLLDPSLGSDYNHDQIGRMILAATLCIRRAPRLRPQISLILKLLQGDEEITTWARQQIDETDELDASDGEPLPTNIQSHLNLALLGLEDDSLSVGSGIQSISIEDYLQGRCSRSSSFN 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 332278 336098 + MELO3C023218.2.1 Cme11g00032 340695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00032 701 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Cme11g00032 701 Gene3D Transferase(Phosphotransferase) domain 1 447 653 - -
Cme11g00032 701 PANTHER OS01G0253100 PROTEIN 11 443 IPR045271 GO:0004714|GO:0006468
Cme11g00032 701 PANTHER OS01G0253100 PROTEIN 441 695 IPR045271 GO:0004714|GO:0006468
Cme11g00032 701 SUPERFAMILY Protein kinase-like (PK-like) 365 627 IPR011009 -
Cme11g00032 701 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 11 443 - -
Cme11g00032 701 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 141 - -
Cme11g00032 701 Gene3D - 16 172 - -
Cme11g00032 701 Pfam Protein kinase domain 457 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00032 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Cme11g00032 701 Gene3D Phosphorylase Kinase; domain 1 347 446 - -
Cme11g00032 701 SMART serkin_6 383 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00032 701 Pfam Universal stress protein family 15 141 IPR006016 -
Cme11g00032 701 CDD USP_Like 16 149 - -
Cme11g00032 701 ProSiteProfiles Protein kinase domain profile. 383 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00032 701 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 441 695 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00032 - - - csv:101216673 1307.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00489 Cme-Chr3:7136649 Cme11g00032 Cme-Chr11:332278 0 dispersed
Cme11g00032 Cme-Chr11:332278 Cme11g00380 Cme-Chr11:3826598 4.32E-125 dispersed
Cme11g00032 Cme-Chr11:332278 Cme02g00224 Cme-Chr2:1798667 1.14E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005017 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 0 0 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65221 PF00069 Pkinase 5.90E-25 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00032 Cme_Chr11 FPKM 1.153693 0.996157 20.105959 16.246941 1.775361 1.683013 2.731996 0.427594 0.301979 0.813893