Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00035 ATGGCAGTGGACGAAGAATCTCCGTTGAAGCTCTACTCATTCTGGGCCAGCACTTGTGCCCAACGTGTTCGAATTGCCCTCAACCTAAAAGGGCTAAACTTTCAGTACAAAGCTGTTGATTTATTGAAGGGAGAGCATTTGGCTCCTGAGTATCTAAAGCTCAATCCTGTTGGTTTTGTACCTACTCTTGTGGATGGGGATGTTGTTATTGCTGACTCTTTTGCTATAATAATGTATTTGGAGGAAAAGTATCCTCAGCGTCCTTTGCTGCCTACTGATCTTGTTAAAAGGGCTATTAATCACCAGGTTGCAAATATTGTTTCTTCAAGCATACAACCTCTTCAAAATTTAATTGTTGAGAAATACCTTGAGGAAAAATGTGGTACTGAGGAGAAACTTTCTTGGATTCACATGATCATTGGAAAAGGTTTTTTAGCACTAGAAAAGTTGCTGACAGTTGAAGCTGGAAAATTTGCTACTGGAGACCAAATTTATCTGGCAGACTTGTTTTTGGCACCTCAACTTCATCGGGCCATTGAAACATTCAATGTTGATATGGTATTGTATTTTAATTATTATTTCTATATATTAATGCTTAATTAA 603 37.81 MAVDEESPLKLYSFWASTCAQRVRIALNLKGLNFQYKAVDLLKGEHLAPEYLKLNPVGFVPTLVDGDVVIADSFAIIMYLEEKYPQRPLLPTDLVKRAINHQVANIVSSSIQPLQNLIVEKYLEEKCGTEEKLSWIHMIIGKGFLALEKLLTVEAGKFATGDQIYLADLFLAPQLHRAIETFNVDMVLYFNYYFYILMLN 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 343889 346448 + MELO3C023220.2.1 Cme11g00035 340698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00035 200 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 7 88 IPR004045 -
Cme11g00035 200 TIGRFAM maiA: maleylacetoacetate isomerase 10 189 IPR005955 GO:0003824|GO:0005737|GO:0009072
Cme11g00035 200 CDD GST_N_Zeta 9 81 IPR034333 -
Cme11g00035 200 PANTHER GLUTATHIONE S-TRANSFERASE 2-LIKE ISOFORM X1 7 189 - -
Cme11g00035 200 PANTHER MALEYLACETOACETATE ISOMERASE 7 189 - -
Cme11g00035 200 SFLD Glutathione Transferase (cytosolic) 9 181 IPR040079 -
Cme11g00035 200 Gene3D Glutaredoxin 7 92 - -
Cme11g00035 200 SFLD Main (cytGST) 9 181 - -
Cme11g00035 200 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 200 IPR010987 -
Cme11g00035 200 Pfam Glutathione S-transferase, N-terminal domain 11 88 IPR004045 -
Cme11g00035 200 Gene3D - 93 193 - -
Cme11g00035 200 SUPERFAMILY GST C-terminal domain-like 88 186 IPR036282 -
Cme11g00035 200 SUPERFAMILY Thioredoxin-like 7 91 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00035 K01800 maiA, GSTZ1; maleylacetoacetate isomerase [EC:5.2.1.2] - csv:116401624 363.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00035 Cme-Chr11:343889 Cme06g00426 Cme-Chr6:2717196 1.31E-13 dispersed
Cme11g00035 Cme-Chr11:343889 Cme11g00039 Cme-Chr11:362417 2.23E-96 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g02339 . 1 210 Glutathione S-transferase Gene Family AT4G02520 59.6 7.9e-65 243.8
Cme01g02341 . 41 249 Glutathione S-transferase Gene Family AT4G02520 57.5 3.9e-64 241.5
Cme01g02340 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 5.3e-61 231.1
Cme01g02339 . 1 211 Glutathione S-transferase Gene Family AT2G02930 60.9 2.5e-66 248.8
Cme01g02341 . 41 249 Glutathione S-transferase Gene Family AT2G02930 58.5 1.8e-64 242.7
Cme01g02340 . 1 210 Glutathione S-transferase Gene Family AT2G02930 59.6 1.1e-63 240.0
Cme01g02341 . 45 246 Glutathione S-transferase Gene Family AT1G02950 52.7 2.1e-59 226.1
Cme01g02339 . 6 215 Glutathione S-transferase Gene Family AT1G02950 53.6 3.0e-58 222.2
Cme01g02340 . 3 206 Glutathione S-transferase Gene Family AT1G02950 54.6 4.0e-55 211.8
Cme01g02339 . 1 211 Glutathione S-transferase Gene Family AT1G02930 57.8 5.6e-63 237.7
Cme01g02341 . 41 249 Glutathione S-transferase Gene Family AT1G02930 56.0 2.1e-62 235.7
Cme01g02340 . 1 210 Glutathione S-transferase Gene Family AT1G02930 56.7 8.9e-61 230.3
Cme01g02339 . 1 211 Glutathione S-transferase Gene Family AT1G02920 59.2 1.7e-64 242.7
Cme01g02341 . 41 249 Glutathione S-transferase Gene Family AT1G02920 56.5 1.9e-63 239.2
Cme01g02340 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.6 1.6e-62 236.1
Cme01g02341 . 4 255 Glutathione S-transferase Gene Family AT2G47730 53.4 1.9e-68 256.1
Cme01g02339 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.2 4.4e-65 245.0
Cme01g02340 . 1 214 Glutathione S-transferase Gene Family AT2G47730 54.4 6.6e-61 231.1
Cme01g02342 . 5 214 Glutathione S-transferase Gene Family AT3G62760 60.5 8.7e-75 276.9
Cme08g02466 . 4 216 Glutathione S-transferase Gene Family AT3G09270 53.5 6.4e-65 244.2
Cme08g02465 . 1 221 Glutathione S-transferase Gene Family AT3G09270 52.9 7.1e-64 240.7
Cme08g02469 . 3 215 Glutathione S-transferase Gene Family AT3G09270 51.9 1.3e-62 236.5
Cme08g02476 . 3 215 Glutathione S-transferase Gene Family AT3G09270 51.4 1.9e-61 232.6
Cme08g02463 . 3 216 Glutathione S-transferase Gene Family AT3G09270 51.2 2.4e-59 225.7
Cme06g00291 . 2 220 Glutathione S-transferase Gene Family AT3G09270 50.2 1.2e-58 223.4
Cme07g01419 . 1 216 Glutathione S-transferase Gene Family AT1G78380 68.5 1.7e-86 315.8
Cme07g01418 . 1 216 Glutathione S-transferase Gene Family AT1G78380 68.5 1.4e-85 312.8
Cme07g01417 . 1 217 Glutathione S-transferase Gene Family AT1G78380 66.4 4.6e-84 307.8
Cme07g01416 . 37 253 Glutathione S-transferase Gene Family AT1G78380 68.7 7.9e-84 307.0
Cme09g01016 . 4 221 Glutathione S-transferase Gene Family AT1G78380 55.0 3.3e-66 248.4
Cme07g01419 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 1.8e-80 295.8
Cme07g01417 . 1 214 Glutathione S-transferase Gene Family AT1G78370 64.0 3.4e-79 291.6
Cme07g01418 . 1 214 Glutathione S-transferase Gene Family AT1G78370 61.7 6.0e-76 280.8
Cme07g01416 . 43 252 Glutathione S-transferase Gene Family AT1G78370 59.5 3.6e-73 271.6
Cme09g01016 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.2 7.6e-63 237.3
Cme07g01419 . 1 214 Glutathione S-transferase Gene Family AT1G78340 62.6 4.9e-78 287.7
Cme07g01418 . 1 216 Glutathione S-transferase Gene Family AT1G78340 61.6 3.2e-77 285.0
Cme07g01417 . 1 214 Glutathione S-transferase Gene Family AT1G78340 62.6 7.1e-77 283.9
Cme07g01416 . 37 253 Glutathione S-transferase Gene Family AT1G78340 61.3 3.9e-75 278.1
Cme09g01016 . 4 219 Glutathione S-transferase Gene Family AT1G78340 53.2 1.1e-61 233.4
Cme07g01419 . 1 214 Glutathione S-transferase Gene Family AT1G78320 52.3 1.7e-58 222.6
Cme07g01416 . 37 256 Glutathione S-transferase Gene Family AT1G78320 51.6 8.5e-58 220.3
Cme07g01417 . 1 218 Glutathione S-transferase Gene Family AT1G78320 50.5 1.1e-57 219.9
Cme07g01419 . 1 215 Glutathione S-transferase Gene Family AT1G17180 67.9 6.5e-86 313.9
Cme07g01417 . 1 216 Glutathione S-transferase Gene Family AT1G17180 65.7 2.5e-85 312.0
Cme07g01418 . 1 218 Glutathione S-transferase Gene Family AT1G17180 62.4 8.8e-83 303.5
Cme07g01416 . 37 256 Glutathione S-transferase Gene Family AT1G17180 63.6 5.7e-82 300.8
Cme09g01016 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.3 8.8e-67 250.4
Cme07g01419 . 2 216 Glutathione S-transferase Gene Family AT1G17190 59.1 7.4e-74 273.9
Cme07g01417 . 3 215 Glutathione S-transferase Gene Family AT1G17190 58.7 1.1e-72 270.0
Cme07g01418 . 3 217 Glutathione S-transferase Gene Family AT1G17190 55.8 4.5e-71 264.6
Cme07g01416 . 38 254 Glutathione S-transferase Gene Family AT1G17190 55.3 2.5e-69 258.8
Cme07g01418 . 3 214 Glutathione S-transferase Gene Family AT3G43800 55.6 4.3e-69 258.1
Cme07g01416 . 39 248 Glutathione S-transferase Gene Family AT3G43800 54.0 7.4e-69 257.3
Cme07g01419 . 3 214 Glutathione S-transferase Gene Family AT3G43800 54.6 6.3e-68 254.2
Cme07g01417 . 3 214 Glutathione S-transferase Gene Family AT3G43800 52.3 8.8e-62 233.8
Cme09g01016 . 1 219 Glutathione S-transferase Gene Family AT3G43800 50.9 9.7e-61 230.3
Cme07g01419 . 1 216 Glutathione S-transferase Gene Family AT1G53680 57.9 3.6e-68 255.0
Cme07g01416 . 36 256 Glutathione S-transferase Gene Family AT1G53680 52.9 7.6e-66 247.3
Cme07g01417 . 4 214 Glutathione S-transferase Gene Family AT1G53680 56.8 9.9e-66 246.9
Cme09g01016 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 2.4e-64 242.3
Cme07g01418 . 4 218 Glutathione S-transferase Gene Family AT1G53680 53.9 4.2e-64 241.5
Cme11g00039 . 51 222 Glutathione S-transferase Gene Family AT2G02390 68.0 1.1e-60 229.9
Cme11g00035 . 50 189 Glutathione S-transferase Gene Family AT2G02390 64.3 2.0e-46 182.6
Cme11g00039 . 8 220 Glutathione S-transferase Gene Family AT2G02380 64.3 5.2e-75 277.7
Cme11g00035 . 6 186 Glutathione S-transferase Gene Family AT2G02380 60.2 5.2e-59 224.6
Cme07g01625 . 4 219 Glutathione S-transferase Gene Family AT5G41210 66.7 4.4e-83 304.7
Cme07g01625 . 4 219 Glutathione S-transferase Gene Family AT5G41240 65.3 1.1e-79 294.7
Cme04g02576 . 8 234 Glutathione S-transferase Gene Family AT5G02780 68.4 9.7e-88 320.1
Cme04g02575 . 13 229 Glutathione S-transferase Gene Family AT5G02780 67.1 3.2e-83 305.1
Cme10g00831 . 75 294 Glutathione S-transferase Gene Family AT5G02780 64.9 9.7e-80 293.5
Cme04g02573 . 9 205 Glutathione S-transferase Gene Family AT5G02780 58.8 3.2e-67 251.9
Cme10g00831 . 17 292 Glutathione S-transferase Gene Family AT3G55040 59.6 8.6e-86 313.9
Cme04g02576 . 5 232 Glutathione S-transferase Gene Family AT3G55040 60.1 5.0e-78 288.1
Cme04g02575 . 3 230 Glutathione S-transferase Gene Family AT3G55040 57.2 3.1e-75 278.9
Cme04g02573 . 7 205 Glutathione S-transferase Gene Family AT3G55040 52.4 4.6e-63 238.4
Cme04g02576 . 8 234 Glutathione S-transferase Gene Family AT5G02790 70.5 2.0e-93 339.0
Cme04g02575 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 5.5e-91 330.9
Cme10g00831 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.0 2.3e-81 298.9
Cme04g02573 . 1 205 Glutathione S-transferase Gene Family AT5G02790 60.1 1.7e-71 266.2
Cme10g00854 . 1 213 Glutathione S-transferase Gene Family AT1G19570 68.5 1.3e-86 316.2
Cme06g01581 . 111 318 Glutathione S-transferase Gene Family AT1G19570 60.8 7.2e-74 273.9
Cme10g00854 . 1 212 Glutathione S-transferase Gene Family AT1G75270 71.7 1.5e-87 319.3
Cme06g01581 . 111 318 Glutathione S-transferase Gene Family AT1G75270 62.7 5.0e-75 277.7
Cme06g01581 . 51 320 Glutathione S-transferase Gene Family AT5G16710 67.6 6.8e-103 370.5
Cme10g00854 . 3 211 Glutathione S-transferase Gene Family AT5G16710 61.2 9.6e-73 270.4
Cme07g00806 . 1 267 Glutathione S-transferase Gene Family AT1G77290 69.7 5.0e-109 391.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000862 1 6 2 2 2 2 3 2 2 2 1 1 3 3 3 3 1 3 3 2 3 2 3 3 4 2 3 8 7 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00035 Cme_Chr11 FPKM 6.122051 7.00155 10.219215 10.910491 7.052176 6.855744 6.611718 12.618007 13.21944 13.328549