Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00039 ATGACCTCGCCGGCCGCAGCTTCTTCCTTGAAGCTTTACTCTTACTGGAGGAGCTCTTGTTCTCACCGTGTTCGAATTGCCCTCAACTTGAAACGTCTAAATTACGAGTACGAGGCTGTTAATCTACTCAAGGGAGAGCAATTCTCTCCCGAGTATGAGAAGCTTAATCCTATTGGTTATGTACCCACTCTTGTGGATGGTGATGTTGTTGTTGCCGACTCTTTTGCTATAATCATGTATTTGGAGGAGAAGTACCCTCAGAATCCTCTGTTGCCTCGTGACCTTGGTAAAAGAGCTATTAATTACCAGGCTGCAAATATCGTTTCTTCCAGCATACAGCCTCTTCAAAATCTAGCTGTTCTGAAGTACATTGAGGAAAAATCTGGTCCAGAAGAAAAACTTCGTTGGGTTCTACATCATATTGAAAAAGGTTTTACAGCACTTGAAAAGCTGCTAAAACCTCATGCTGGGAAATATGCTACTGGAGATGAAATCTCTCTGGCGGACTTGTTCTTGGCTCCTCAAATTCATGGCGCCATCAATAGATTCAATATTGACATGTCCAAATTTTCTCTATTAAGCAGGTTGAATGAGGAATACAATGGTATAGCAGCATTTCAAGATGCAGCCCCAGCGAAGCAGCCTGACGCTACTCCAACCTCTACTTAG 669 43.05 MTSPAAASSLKLYSYWRSSCSHRVRIALNLKRLNYEYEAVNLLKGEQFSPEYEKLNPIGYVPTLVDGDVVVADSFAIIMYLEEKYPQNPLLPRDLGKRAINYQAANIVSSSIQPLQNLAVLKYIEEKSGPEEKLRWVLHHIEKGFTALEKLLKPHAGKYATGDEISLADLFLAPQIHGAINRFNIDMSKFSLLSRLNEEYNGIAAFQDAAPAKQPDATPTST 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 362417 366322 + MELO3C023224.2.1 Cme11g00039 340702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00039 222 CDD GST_N_Zeta 10 82 IPR034333 -
Cme11g00039 222 Gene3D Glutaredoxin 7 92 - -
Cme11g00039 222 PANTHER MALEYLACETOACETATE ISOMERASE 5 218 - -
Cme11g00039 222 SFLD Glutathione Transferase (cytosolic) 10 190 IPR040079 -
Cme11g00039 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 94 219 IPR010987 -
Cme11g00039 222 CDD GST_C_Zeta 97 214 IPR034330 -
Cme11g00039 222 Pfam Glutathione S-transferase, C-terminal domain 123 195 IPR004046 -
Cme11g00039 222 Gene3D - 93 220 - -
Cme11g00039 222 SUPERFAMILY GST C-terminal domain-like 89 218 IPR036282 -
Cme11g00039 222 PANTHER GLUTATHIONE S-TRANSFERASE 2-LIKE ISOFORM X1 5 218 - -
Cme11g00039 222 Pfam Glutathione S-transferase, N-terminal domain 12 89 IPR004045 -
Cme11g00039 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 8 89 IPR004045 -
Cme11g00039 222 SUPERFAMILY Thioredoxin-like 7 93 IPR036249 -
Cme11g00039 222 SFLD Main (cytGST) 10 190 - -
Cme11g00039 222 TIGRFAM maiA: maleylacetoacetate isomerase 11 217 IPR005955 GO:0003824|GO:0005737|GO:0009072
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00259 Cme-Chr6:1581554 Cme11g00039 Cme-Chr11:362417 2.59E-55 dispersed
Cme10g00854 Cme-Chr10:5735347 Cme11g00039 Cme-Chr11:362417 3.11E-08 dispersed
Cme11g00039 Cme-Chr11:362417 Cme06g00426 Cme-Chr6:2717196 1.34E-13 dispersed
Cme11g00035 Cme-Chr11:343889 Cme11g00039 Cme-Chr11:362417 2.23E-96 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00039 K01800 - csv:101213302 421.009