Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00046 ATGGATGAAGGTGGCATAAGTGGAAATAATAGCTTAAATCTGTTGCCTCCTGGTCTTAGATTCTGCCCAACAGATGAAGACCTTGTGCTTCACTTTCTCTATCACAAAGCTAACTCTCATCATCATTTTTCCAATTCCATTATTATTCCTCATCTTCAGCTTCATCTCTATAACCCTTGGCAGTTCCATGGTAAAACACTTTCAAATGGGGACAATATTCATTACTTTTTCAGCAGAGTGGGAGAAAGTAGAGCCACAGAGAGTGGATATTGGAAAGATGTTTTAATGGATGAACCAATCTTTTGCAGTGCCAATGGGGATGAAGTGGGTATCAAAAAATATCATATTTTCTTTGCTGGTGATCAAGAAGAAGATGATGAATCACCATCACCCATTCAAACAAGCTGGATCATGCAAGAGTATCACATTTACAACTACCTTTTGAATAACACTCATCATGCTCATCCATCTCAAAACAACAACAATAATCTATCACAAACAAAATCAGAGTTTGGATTATGGGTTGTGTGTCGAGTATTTGAAGCAAAAGAGAATAATAATATTATTGGAAGAAGTATGTTTTGTTATGAGGAAGATGATGATGATGATAATGAAAGTGAACTTTCTTATTTGGATGAGATGTATTTGAGTTTAGATGATATTTGA 666 35.44 MDEGGISGNNSLNLLPPGLRFCPTDEDLVLHFLYHKANSHHHFSNSIIIPHLQLHLYNPWQFHGKTLSNGDNIHYFFSRVGESRATESGYWKDVLMDEPIFCSANGDEVGIKKYHIFFAGDQEEDDESPSPIQTSWIMQEYHIYNYLLNNTHHAHPSQNNNNNLSQTKSEFGLWVVCRVFEAKENNNIIGRSMFCYEEDDDDDNESELSYLDEMYLSLDDI 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 399325 401488 + MELO3C023230.2.1 Cme11g00046 340709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00046 221 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Cme11g00046 221 PANTHER NAC TRANSCRIPTION FACTOR 56 12 220 - -
Cme11g00046 221 Gene3D NAC domain 24 187 IPR036093 GO:0003677|GO:0006355
Cme11g00046 221 ProSiteProfiles NAC domain profile. 15 182 IPR003441 GO:0003677|GO:0006355
Cme11g00046 221 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 12 220 - -
Cme11g00046 221 SUPERFAMILY NAC domain 13 180 IPR036093 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00046 - - - csv:101214025 417.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00046 Cme-Chr11:399325 Cme04g00689 Cme-Chr4:7741217 2.54E-26 dispersed
Cme11g00046 Cme-Chr11:399325 Cme11g02352 Cme-Chr11:30536828 1.21E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1317 . . . . . . . . Cmo02g00643 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01390 . . . . Bma06g00491 Sed05g3849 . . . . . . . . Bhi10g01692 Tan07g0845 Cmetu11g1623 . Hepe08g1230 . . Cla02g00044 Cam02g0047 . Cco02g0040 Clacu02g0046 Cmu02g0046 Cre02g0385 Lsi10g00744 . . Cme11g00046
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014205 0 1 0 0 0 1 1 1 0 0 1 1 1 1 1 1 1 0 1 1 1 2 1 0 1 1 1 2 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42121 PF02365 NAM 1.40E-21 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00046 Cme_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.327964