Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00056 ATGGATGGACAAGCTTCGATATCCAATGGCACAGACGATACAATCGTCTGCTATGCGCCGACGATGATTACGACAAATGGGGTGTGGCAAGGTGACAATCCTTTGGATTATTCTCTCCCCCTCTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCATATTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCGGTACTAGGGAGGAGTTCTAGATTTGCCAACACGGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAACGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTTGAAATGGATCTCTCAGTGATTCGTCGTACAGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCATTCGGAATAGGAGCTGCCTTTTCATTCCAATTGCACAAAGAAGGTCAAAAATTGAACTACAACACTTACATTATGTTTCTTGGTATTGCGCTCTCCGTGACTGCTTTCCCAGTGCTAGCTAGAATTCTTGCGGAGCTTAAACTTATAAATTCAGAGCTTGGGAGGATGGCTATGGCATCTGCACTTTTCAACGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCTGAGAATGATTCCTCATCTTTGGCTTCGTTATGGGTTGTACTGTCAAGTGCAGGCTTTGTTTTGTTTTGCATTTTCATTGTTAGACCGATGATCTCATGGATGATTCGAAAAACTCCAGAAGGGGAAAGTGTGAGTGAGTTCTACATATGTTTGATTCTCACAGGAGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCCGTTTTTGGGGCTTTTGTGTTTGGTTTAGTTATCCCAAATGGTTCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGCCTTTTGCTTCCTCTTTTCTTCGCAATAAGTGGGCTTAAGACTAATGTGTCTAGCGTAGACGGACTATTCGCTTGGATATCTATTCTATGTATCACTCTCCTTGCTTTCGTTGGCAAAGTCATAGGAACTCTTCTTGCCTCCATTTGTTATCAAATGTCCTATCGTGAAGGCGTCACATTAGGTTTGCTTATGAACACCAAAGGCCTTATTGAAATGATCATCCTCAATGTCGGAAAGGACCAGAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTAGCTCTCATTATGACAGGAATAATAACACCAGTAGTTACCATAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGCATCAAAACCAGATTCAGAATTTAGAGTATTAGTTTGTGTACACACACCTCGAAATGTGCCAACAATCATCAGCCTCCTTGATGCTTCCCATCCAACTAAAAGATCCCCAATTTGCATTTACGTGCTACACTTGGTTGAACTCACAGGTCGAGCCTCCGCCATGCTCATTGTCCACAACACCAGAAAATCAGGCCGCCCTGCATTAAATCGAACACAAGCTCAATCAGATCACATCATTAATGCATTCGAGAACTATGAACAACACGTCGATTGCGTCTCTGTTCAACCTCTCACAGCCATTTCCCCTTACTCCACAATGCACGAAGACATCTGCAATTTAGCTGAAGATAAACGAGTTGCCTTCATAATCATCCCATTCCATAAACAACAAACAGTGGATGGAGGAATGGAAGCTACAAATCCAGCATTTAGATTGGTAAACCAAAATGTATTAGCTAATGCCCCTTGCTCCGTCGGAATCCTCGTCGATCGAGGCTTAAACGGTGCGAACCGAGTCGCATCAAACAAAGCAACTCATTACAACATAATCGTGTTGTTCTTTGGTGGACAAGATGATAGAGAAGCCCTATCATACGCTTGGAGAATGTCAGAACATCCAGGAGTGAATTTAACCGTAATGCGATTCATCGCCGCACAAGAAATAATGGAACCAAAACCAGAAGAAAGCACACCAAGAATTTCAACAATGGAAACAGAAATTAAAAGAGATAGGAAACTAGACGAAGATTATATAAACGAATTTAGGGCAAGGAATCCAAACAGTGAGTCAATTACTTACACAGAAAAAGTGTTGAACAACGGCGAAGAGACAGTGGCGGCCATAAGATCAATGGACGATGCTCACGACCTGTTCATCGTTGGTAGAGGTGAATCTCACATATCACCTCTCACCGCCGGACTTACGGACTGGAGTGAATGTCCAGAGCTGGGAGCAATAGGCGATTTGCTAGCCTCATCGGATTTTGCAGCAACGACTTCAGTTTTGGTAGTGCAACAGTTCGGAGCAGCAATGGCGGTGGAACCTGGAGAAGAAGAAGAAGGTACACCACATAATCAAGATCTAAGTGATCCTTACCAAAGCTTGAGATCCATTAATTTGAGGCAACATACTCCATCCAGAGCTCAAATCATTTATGATACATGA 2514 42.6 MDGQASISNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRILVFLLKPFRQPRVISEILGGVILGPSVLGRSSRFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKEGQKLNYNTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSAGFVLFCIFIVRPMISWMIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVSSVDGLFAWISILCITLLAFVGKVIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALIMTGIITPVVTIIYRPTRRFLPYKKRTIQASKPDSEFRVLVCVHTPRNVPTIISLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGANRVASNKATHYNIIVLFFGGQDDREALSYAWRMSEHPGVNLTVMRFIAAQEIMEPKPEESTPRISTMETEIKRDRKLDEDYINEFRARNPNSESITYTEKVLNNGEETVAAIRSMDDAHDLFIVGRGESHISPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAMAVEPGEEEEGTPHNQDLSDPYQSLRSINLRQHTPSRAQIIYDT 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 476797 480308 + MELO3C023240.2.1 Cme11g00056 340719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00056 837 PANTHER CATION/H + ANTIPORTER 12 806 - -
Cme11g00056 837 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cme11g00056 837 PANTHER BNAA09G08340D PROTEIN 12 806 - -
Cme11g00056 837 Gene3D - 478 759 - -
Cme11g00056 837 Gene3D - 41 439 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00056 - - - csv:101219265 1565.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02457 Cme-Chr1:32775878 Cme11g00056 Cme-Chr11:476797 2.62E-78 dispersed
Cme04g00055 Cme-Chr4:438845 Cme11g00056 Cme-Chr11:476797 2.45E-118 dispersed
Cme06g01768 Cme-Chr6:20451784 Cme11g00056 Cme-Chr11:476797 1.23E-166 dispersed
Cme06g01770 Cme-Chr6:20495436 Cme11g00056 Cme-Chr11:476797 8.01E-143 dispersed
Cme07g01598 Cme-Chr7:21761468 Cme11g00056 Cme-Chr11:476797 0 dispersed
Cme07g01599 Cme-Chr7:21780532 Cme11g00056 Cme-Chr11:476797 0 dispersed
Cme08g01886 Cme-Chr8:22966368 Cme11g00056 Cme-Chr11:476797 0 dispersed
Cme08g02387 Cme-Chr8:30749067 Cme11g00056 Cme-Chr11:476797 0 dispersed
Cme09g01164 Cme-Chr9:16338166 Cme11g00056 Cme-Chr11:476797 4.65E-149 dispersed
Cme10g01199 Cme-Chr10:12185783 Cme11g00056 Cme-Chr11:476797 7.95E-170 dispersed
Cme11g00056 Cme-Chr11:476797 Cme12g00013 Cme-Chr12:197695 1.27E-166 dispersed
Cme11g01710 Cme-Chr11:25177398 Cme11g00056 Cme-Chr11:476797 3.58E-08 dispersed
Cme12g00045 Cme-Chr12:450285 Cme11g00056 Cme-Chr11:476797 2.75E-160 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g00056 . 11 815 Antiporter Super Family AT2G13620 72.2 0.0e+00 1158.3
Cme07g01598 . 11 785 Antiporter Super Family AT2G13620 50.8 2.7e-209 725.7
Cme08g02387 . 74 846 Antiporter Super Family AT3G53720 69.1 4.4e-291 997.3
Cme07g01599 . 83 779 Antiporter Super Family AT3G53720 50.7 1.4e-183 640.2
Cme07g01599 . 1 779 Antiporter Super Family AT5G41610 69.9 2.6e-310 1061.2
Cme07g01598 . 1 785 Antiporter Super Family AT5G41610 66.8 6.7e-298 1020.0
Cme07g01597 . 7 791 Antiporter Super Family AT5G41610 63.5 8.2e-280 959.9
Cme08g02387 . 6 821 Antiporter Super Family AT5G41610 50.8 2.4e-207 719.2
Cme07g01598 . 11 783 Antiporter Super Family AT4G23700 66.3 3.7e-288 987.6
Cme07g01599 . 9 796 Antiporter Super Family AT4G23700 62.9 4.1e-279 957.6
Cme07g01597 . 8 791 Antiporter Super Family AT4G23700 62.0 2.6e-273 938.3
Cme07g01599 . 5 779 Antiporter Super Family AT3G17630 63.7 3.7e-272 934.5
Cme07g01598 . 4 783 Antiporter Super Family AT3G17630 62.7 6.2e-272 933.7
Cme07g01597 . 7 791 Antiporter Super Family AT3G17630 59.5 9.1e-255 876.7
Cme08g02387 . 6 815 Antiporter Super Family AT3G17630 52.6 5.4e-207 718.0
Cme07g01598 . 4 785 Antiporter Super Family AT1G64170 57.8 8.1e-243 837.0
Cme07g01599 . 1 784 Antiporter Super Family AT1G64170 55.8 1.3e-232 803.1
Cme07g01597 . 3 794 Antiporter Super Family AT1G64170 54.2 9.9e-225 776.9
Cme11g00056 . 11 815 Antiporter Super Family AT2G13620 72.2 0.0e+00 1158.3
Cme07g01598 . 11 785 Antiporter Super Family AT2G13620 50.8 2.7e-209 725.7
Cme07g01598 . 4 785 Antiporter Super Family AT1G64170 57.8 8.1e-243 837.0
Cme07g01599 . 1 784 Antiporter Super Family AT1G64170 55.8 1.3e-232 803.1
Cme07g01597 . 3 794 Antiporter Super Family AT1G64170 54.2 9.9e-225 776.9
Cme07g01598 . 11 783 Antiporter Super Family AT4G23700 66.3 3.7e-288 987.6
Cme07g01599 . 9 796 Antiporter Super Family AT4G23700 62.9 4.1e-279 957.6
Cme07g01597 . 8 791 Antiporter Super Family AT4G23700 62.0 2.6e-273 938.3
Cme07g01599 . 1 779 Antiporter Super Family AT5G41610 69.9 2.6e-310 1061.2
Cme07g01598 . 1 785 Antiporter Super Family AT5G41610 66.8 6.7e-298 1020.0
Cme07g01597 . 7 791 Antiporter Super Family AT5G41610 63.5 8.2e-280 959.9
Cme08g02387 . 6 821 Antiporter Super Family AT5G41610 50.8 2.4e-207 719.2
Cme07g01599 . 5 779 Antiporter Super Family AT3G17630 63.7 3.7e-272 934.5
Cme07g01598 . 4 783 Antiporter Super Family AT3G17630 62.7 6.2e-272 933.7
Cme07g01597 . 7 791 Antiporter Super Family AT3G17630 59.5 9.1e-255 876.7
Cme08g02387 . 6 815 Antiporter Super Family AT3G17630 52.6 5.4e-207 718.0
Cme08g02387 . 74 846 Antiporter Super Family AT3G53720 69.1 4.4e-291 997.3
Cme07g01599 . 83 779 Antiporter Super Family AT3G53720 50.7 1.4e-183 640.2
Cme01g02457 . 24 425 Antiporter Super Family AT3G52080 58.0 3.3e-132 469.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00056 Cme_Chr11 FPKM 0.292019 0.986386 0.603978 0.819157 0.385386 0.0 0.364884 0.0 0.0 0.0