Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00056 ATGGATGGACAAGCTTCGATATCCAATGGCACAGACGATACAATCGTCTGCTATGCGCCGACGATGATTACGACAAATGGGGTGTGGCAAGGTGACAATCCTTTGGATTATTCTCTCCCCCTCTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCATATTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCGGTACTAGGGAGGAGTTCTAGATTTGCCAACACGGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAACGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTTGAAATGGATCTCTCAGTGATTCGTCGTACAGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCATTCGGAATAGGAGCTGCCTTTTCATTCCAATTGCACAAAGAAGGTCAAAAATTGAACTACAACACTTACATTATGTTTCTTGGTATTGCGCTCTCCGTGACTGCTTTCCCAGTGCTAGCTAGAATTCTTGCGGAGCTTAAACTTATAAATTCAGAGCTTGGGAGGATGGCTATGGCATCTGCACTTTTCAACGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCTGAGAATGATTCCTCATCTTTGGCTTCGTTATGGGTTGTACTGTCAAGTGCAGGCTTTGTTTTGTTTTGCATTTTCATTGTTAGACCGATGATCTCATGGATGATTCGAAAAACTCCAGAAGGGGAAAGTGTGAGTGAGTTCTACATATGTTTGATTCTCACAGGAGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCCGTTTTTGGGGCTTTTGTGTTTGGTTTAGTTATCCCAAATGGTTCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGCCTTTTGCTTCCTCTTTTCTTCGCAATAAGTGGGCTTAAGACTAATGTGTCTAGCGTAGACGGACTATTCGCTTGGATATCTATTCTATGTATCACTCTCCTTGCTTTCGTTGGCAAAGTCATAGGAACTCTTCTTGCCTCCATTTGTTATCAAATGTCCTATCGTGAAGGCGTCACATTAGGTTTGCTTATGAACACCAAAGGCCTTATTGAAATGATCATCCTCAATGTCGGAAAGGACCAGAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTAGCTCTCATTATGACAGGAATAATAACACCAGTAGTTACCATAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGCATCAAAACCAGATTCAGAATTTAGAGTATTAGTTTGTGTACACACACCTCGAAATGTGCCAACAATCATCAGCCTCCTTGATGCTTCCCATCCAACTAAAAGATCCCCAATTTGCATTTACGTGCTACACTTGGTTGAACTCACAGGTCGAGCCTCCGCCATGCTCATTGTCCACAACACCAGAAAATCAGGCCGCCCTGCATTAAATCGAACACAAGCTCAATCAGATCACATCATTAATGCATTCGAGAACTATGAACAACACGTCGATTGCGTCTCTGTTCAACCTCTCACAGCCATTTCCCCTTACTCCACAATGCACGAAGACATCTGCAATTTAGCTGAAGATAAACGAGTTGCCTTCATAATCATCCCATTCCATAAACAACAAACAGTGGATGGAGGAATGGAAGCTACAAATCCAGCATTTAGATTGGTAAACCAAAATGTATTAGCTAATGCCCCTTGCTCCGTCGGAATCCTCGTCGATCGAGGCTTAAACGGTGCGAACCGAGTCGCATCAAACAAAGCAACTCATTACAACATAATCGTGTTGTTCTTTGGTGGACAAGATGATAGAGAAGCCCTATCATACGCTTGGAGAATGTCAGAACATCCAGGAGTGAATTTAACCGTAATGCGATTCATCGCCGCACAAGAAATAATGGAACCAAAACCAGAAGAAAGCACACCAAGAATTTCAACAATGGAAACAGAAATTAAAAGAGATAGGAAACTAGACGAAGATTATATAAACGAATTTAGGGCAAGGAATCCAAACAGTGAGTCAATTACTTACACAGAAAAAGTGTTGAACAACGGCGAAGAGACAGTGGCGGCCATAAGATCAATGGACGATGCTCACGACCTGTTCATCGTTGGTAGAGGTGAATCTCACATATCACCTCTCACCGCCGGACTTACGGACTGGAGTGAATGTCCAGAGCTGGGAGCAATAGGCGATTTGCTAGCCTCATCGGATTTTGCAGCAACGACTTCAGTTTTGGTAGTGCAACAGTTCGGAGCAGCAATGGCGGTGGAACCTGGAGAAGAAGAAGAAGGTACACCACATAATCAAGATCTAAGTGATCCTTACCAAAGCTTGAGATCCATTAATTTGAGGCAACATACTCCATCCAGAGCTCAAATCATTTATGATACATGA 2514 42.6 MDGQASISNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRILVFLLKPFRQPRVISEILGGVILGPSVLGRSSRFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKEGQKLNYNTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSAGFVLFCIFIVRPMISWMIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVSSVDGLFAWISILCITLLAFVGKVIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALIMTGIITPVVTIIYRPTRRFLPYKKRTIQASKPDSEFRVLVCVHTPRNVPTIISLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGANRVASNKATHYNIIVLFFGGQDDREALSYAWRMSEHPGVNLTVMRFIAAQEIMEPKPEESTPRISTMETEIKRDRKLDEDYINEFRARNPNSESITYTEKVLNNGEETVAAIRSMDDAHDLFIVGRGESHISPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAMAVEPGEEEEGTPHNQDLSDPYQSLRSINLRQHTPSRAQIIYDT 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 476797 480308 + MELO3C023240.2.1 Cme11g00056 340719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00056 837 PANTHER CATION/H + ANTIPORTER 12 806 - -
Cme11g00056 837 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cme11g00056 837 PANTHER BNAA09G08340D PROTEIN 12 806 - -
Cme11g00056 837 Gene3D - 478 759 - -
Cme11g00056 837 Gene3D - 41 439 IPR038770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02457 Cme-Chr1:32775878 Cme11g00056 Cme-Chr11:476797 2.62E-78 dispersed
Cme04g00055 Cme-Chr4:438845 Cme11g00056 Cme-Chr11:476797 2.45E-118 dispersed
Cme06g01768 Cme-Chr6:20451784 Cme11g00056 Cme-Chr11:476797 1.23E-166 dispersed
Cme06g01770 Cme-Chr6:20495436 Cme11g00056 Cme-Chr11:476797 8.01E-143 dispersed
Cme07g01598 Cme-Chr7:21761468 Cme11g00056 Cme-Chr11:476797 0 dispersed
Cme07g01599 Cme-Chr7:21780532 Cme11g00056 Cme-Chr11:476797 0 dispersed
Cme08g01886 Cme-Chr8:22966368 Cme11g00056 Cme-Chr11:476797 0 dispersed
Cme08g02387 Cme-Chr8:30749067 Cme11g00056 Cme-Chr11:476797 0 dispersed
Cme09g01164 Cme-Chr9:16338166 Cme11g00056 Cme-Chr11:476797 4.65E-149 dispersed
Cme10g01199 Cme-Chr10:12185783 Cme11g00056 Cme-Chr11:476797 7.95E-170 dispersed
Cme11g00056 Cme-Chr11:476797 Cme12g00013 Cme-Chr12:197695 1.27E-166 dispersed
Cme11g01710 Cme-Chr11:25177398 Cme11g00056 Cme-Chr11:476797 3.58E-08 dispersed
Cme12g00045 Cme-Chr12:450285 Cme11g00056 Cme-Chr11:476797 2.75E-160 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00056 - - csv:101219265 1565.05