Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00065 ATGCCTTCCCTTCTCCTTCTCTTCTTCCTCCCTCTACATTTCTCCTCCGCCGCCCACCAAACCCTTCCCCCTGAGATCGCCGCCGCCTGCAACTCCACCCGCTTCCCGGACCAATGCGCATCCTCCATCTCCCAATCCAACCGTCTCCTCCAGAATCCCACTCCGCTGCAGATCATTCATGCCGCCCTCTACCTCTCCTCAGAGAATCTCAAAACTGCTAAATCCATGGTGAAGGCCATTCTCGATTCTGCCGAGAAGATTCCCAACCGCAACCGCACCGCGGCGGCGCTAAGCTGTATGGACGCGCTGGGTTATTCGGAGTACAGAATTTCTCTTTCCAACGACGCAATTCCGCTCGGTCGAATTAAAGACGCGCGCGCGTGGTTAAGCGCGTCGCTCCTCTACCAGACCGGTTGCCGGTCGGGGTTGAAGTACGTGAACGACACGCACGAAGTGGATCAAACGATGTCGTTTCTTGACAACTTAACCGTGCTGTCGAGCAACGCGCTGAGCATGGTTGTGGCGTACGATAATTTCGGGAATGAGACGGCGGCCTGGTTACCTCCGAGGACGGAGCGAGACGGGTTCTGGGAACACAGCAGTGGAACGGGGGAGGTGGTGAGAGGGGTGAGGATTCCGGCGAAGACGGAGGTGAATGTGACGGTGTGCAAGGATGGGAGTGAGGGGTGTTATCGAACGGTACAAGCAGCGGTGGAGGCGGCGCCGGGAGAGTCGGCGGTGAGGTTTGTGATACACATAAAGGAAGGGGTTTACGAAGAGAGTGTGAGAGTGGGGATAGAGAAGAAGAATTTGGTATTTTTGGGGGATGGGATGGGCAAAACGGTCATTACTGGATCTTTGAGTGTGGGTCAGCCTGGGATCTCGACTTACAATTCGGCCACCGTCGGAGTTCTTGGGGATGGATTCATTGCAAGTGAACTCACCATTCAAAACACAGCAGGTCCTGATGTCCACCAAGCTGTTGCCTTTAGATCAGACAGTGACCTCTCGATCATACATAACTGTGAGTTTATAAGCAATCAAGACACTCTCTACGCCCATTCCCTCCGTCAATTCTACAACTCCTGTCGAATTTTAGGCAATGTGGACTTCATTTTTGGCAACTCAGCCTCCTTCTTTCTAAACTGTCATATCTTAGTTCGTCCTCACCCACTCAATCCTCAACTGGGAGATGAGAATCCAATCACTGCACATGGGAGGACAGACCCAGCGCAGTCGACTGGGTTTGTGTTCCAAAACTGCTTGTTAAATGGCACTGAGGAGTTCATGGCATTGTACTATGCCAATCCTCAGAGGCATAGGACCTTCTTGGGGCGGCCTTGGAAAGAGTATTCGAGAACGGTTTTTATACATTGTGAACTTGAAGCTCTTGTTTCGTCATCGGGATGGATGCCATGGAGTGGGGATATTGGATTGAATACATTATATTATGGGGAGTTTGAGAATTTTGGAACTGGTTCAAATTCGTCAAAACGAGTTGCATGGAGTAATCAAATCCCTGCAGAGCATGCTTTTAGTTACTCTATACAAAATTTCATCCAAGGAAACGAGTGGATTCCTTCCTCTTAA 1590 50.94 MPSLLLLFFLPLHFSSAAHQTLPPEIAAACNSTRFPDQCASSISQSNRLLQNPTPLQIIHAALYLSSENLKTAKSMVKAILDSAEKIPNRNRTAAALSCMDALGYSEYRISLSNDAIPLGRIKDARAWLSASLLYQTGCRSGLKYVNDTHEVDQTMSFLDNLTVLSSNALSMVVAYDNFGNETAAWLPPRTERDGFWEHSSGTGEVVRGVRIPAKTEVNVTVCKDGSEGCYRTVQAAVEAAPGESAVRFVIHIKEGVYEESVRVGIEKKNLVFLGDGMGKTVITGSLSVGQPGISTYNSATVGVLGDGFIASELTIQNTAGPDVHQAVAFRSDSDLSIIHNCEFISNQDTLYAHSLRQFYNSCRILGNVDFIFGNSASFFLNCHILVRPHPLNPQLGDENPITAHGRTDPAQSTGFVFQNCLLNGTEEFMALYYANPQRHRTFLGRPWKEYSRTVFIHCELEALVSSSGWMPWSGDIGLNTLYYGEFENFGTGSNSSKRVAWSNQIPAEHAFSYSIQNFIQGNEWIPSS 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 548267 550764 + MELO3C023253.2.1 Cme11g00065 340728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00065 529 Gene3D - 213 529 IPR012334 -
Cme11g00065 529 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 175 IPR035513 -
Cme11g00065 529 SMART PMEI_2 21 172 IPR006501 GO:0004857
Cme11g00065 529 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 8 527 - -
Cme11g00065 529 SUPERFAMILY Pectin lyase-like 217 528 IPR011050 -
Cme11g00065 529 Pfam Plant invertase/pectin methylesterase inhibitor 26 172 IPR006501 GO:0004857
Cme11g00065 529 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 173 IPR035513 -
Cme11g00065 529 Pfam Pectinesterase 219 523 IPR000070 GO:0030599|GO:0042545
Cme11g00065 529 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 172 IPR006501 GO:0004857
Cme11g00065 529 CDD PMEI-like_3 28 173 - -
Cme11g00065 529 PANTHER PECTINESTERASE 8 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00065 Cme-Chr11:548267 Cme06g00898 Cme-Chr6:6304129 1.56E-104 dispersed
Cme11g00065 Cme-Chr11:548267 Cme11g00066 Cme-Chr11:551946 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00065 - - csv:101220929 1004.59