Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00066 ATGGTGTTCCCCAGAAAACCCACTTTCCCAATCTCCAAATCCACTCTCCTTTTCCTCTCCATGGCCTCCCTCTCCTTTCTCTCTTTCCTCTCTCTCTCCTTCTTCTTCTTCTCCCTCTCTCTCTCTTCCTCCTCCTCCGCCGTCCGCCACCACCACTCCCACTCCCACCTCCCATCGCATTTCACCAACACCCCCTCCGACCAGATCCTTCACGCCTGCAAATCCACCCGTTTCCCCGATCAATGCGGATCTTCCCTCTCTCACTCCTCTCTCCCCCCCAATCCCTCCCCTCTCCAAATCCTTCAATCCGCCATCGCTTTATCCTCCGACGGTCTAACCACTGCCCAATCCTTGGTTAAACAGATCCTCGATTCCTCCGCCACGAATCTCAATCGTACCACCGCCGCCAAGAATTGCCTCGAGGTCCTACGAAATTCCGATTACCGAATCTCCCTCACCAATGACGCTCTCCACCGCGGTCGAACCAAAGACGCCCGCGCCTGGCTCAGCGCGTCTCTGCTTTACCATTACGATTGCTGGTCAGCGCTGAAATACGCGAACGACACTCAGTTGGTCGATAAAACCATGGCGTTTCTTGATTCTTTAATCGGTCTCTCCAGTAATGCGCTTAGTATGTTGGTGGCTTACGATATTTACGGGAATGATACGGCAGCGTGGACCCCGCCGAGGACGGAGCGGGATGGGTTTTGGGAAGGCGGCGGAGGTGGATCTGGGTTGGGGTTTAGCGGTGGGTTTCCGGCAAAGGTGACGGCAGATGCGACGGTGTGTAAGGATGGTAGTGGGGGTTGTTATGGAAGTATTCAGAAAGCGGTGGATGCGGCGCCGGAGAACGCGGCGGCGCGTAGGTTTGTGATTCATATTAAAGAAGGTGTTTATGAGGAAATTGTGAGGGTTCCGTTAGAGAAGAAGAATGTTGTGTTTTTAGGAGATGGGATGGGCAAAACGGTCATTACTGGCTCCTTGAACGCGGGCCAGCCTGGGATTTCAACTTACAATACTGCCACCCTTGGAGTACTTGGTGATGGATTCATGGCTAGTGGTCTCACCATTCAAAACACAGCAGGGCCTGATGCCCATCAAGCTGTGGCCTTTAGATCAGACAGTGATCTCTCTGTAATTCAAGATTGTGAGTTTATAGGCAACCAAGATACTCTCTATGCTCATTCCCTTCGCCAATTCTACAAATCTTGTAAGATTCAAGGCAATGTAGACTTCATCTTTGGAAACTCAGCTTCCATCTTCCAAGATTGCGAGATCCTAATCCGCCCTCGACAACTCAAGCCCGAGAAAGGGGAAAACAACGCCATAACTGCACATGGCAGGACCGACCCTGCTCAATCCACAGGCTTTGTATTCCAAAACTGCCTCATAAATGGCACTCAAGAGTATATGTCATTGTACTACAGCAAGCCTAAGGTACATAAGAACTTCTTGGGGAGGCCGTGGAAGGAGTACTCGAGGACGGTTTTTATACATTGTAATCTGGAGGCACTTGTGTCCCCGTCGGGGTGGATGCCGTGGAGTGGGGATTTTGCTTTGAAGACTCTGTTCTATGGAGAGTTTGAGAACTCCGGTGTGGGTTCGAAGACGTCGGAGAGAGTCGGGTGGAGTAGTCAGATTCCGGCACAACATGTTTTTAGTTACTCTGTTCAGAATTTCATTCAAGGAGATGAATGGATTCCTTCATCTGAATCATCTAATGATCAAAAAATGTTGAACAAGAAAAGTAAAGATGTAAAATTAGATTAG 1770 50.0 MVFPRKPTFPISKSTLLFLSMASLSFLSFLSLSFFFFSLSLSSSSSAVRHHHSHSHLPSHFTNTPSDQILHACKSTRFPDQCGSSLSHSSLPPNPSPLQILQSAIALSSDGLTTAQSLVKQILDSSATNLNRTTAAKNCLEVLRNSDYRISLTNDALHRGRTKDARAWLSASLLYHYDCWSALKYANDTQLVDKTMAFLDSLIGLSSNALSMLVAYDIYGNDTAAWTPPRTERDGFWEGGGGGSGLGFSGGFPAKVTADATVCKDGSGGCYGSIQKAVDAAPENAAARRFVIHIKEGVYEEIVRVPLEKKNVVFLGDGMGKTVITGSLNAGQPGISTYNTATLGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFIGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASIFQDCEILIRPRQLKPEKGENNAITAHGRTDPAQSTGFVFQNCLINGTQEYMSLYYSKPKVHKNFLGRPWKEYSRTVFIHCNLEALVSPSGWMPWSGDFALKTLFYGEFENSGVGSKTSERVGWSSQIPAQHVFSYSVQNFIQGDEWIPSSESSNDQKMLNKKSKDVKLD 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 551946 554318 + MELO3C023254.2.1 Cme11g00066 340729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00066 589 Gene3D - 253 577 IPR012334 -
Cme11g00066 589 Pfam Plant invertase/pectin methylesterase inhibitor 69 212 IPR006501 GO:0004857
Cme11g00066 589 PANTHER PECTINESTERASE 19 570 - -
Cme11g00066 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 215 IPR035513 -
Cme11g00066 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 212 IPR035513 -
Cme11g00066 589 PANTHER PECTINESTERASE 19 570 - -
Cme11g00066 589 Pfam Pectinesterase 259 564 IPR000070 GO:0030599|GO:0042545
Cme11g00066 589 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 212 IPR006501 GO:0004857
Cme11g00066 589 CDD PMEI-like_3 72 212 - -
Cme11g00066 589 SMART PMEI_2 64 212 IPR006501 GO:0004857
Cme11g00066 589 MobiDBLite consensus disorder prediction 569 589 - -
Cme11g00066 589 SUPERFAMILY Pectin lyase-like 257 569 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00066 Cme-Chr11:551946 Cme06g00898 Cme-Chr6:6304129 3.10E-109 dispersed
Cme11g00065 Cme-Chr11:548267 Cme11g00066 Cme-Chr11:551946 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00066 - - csv:101221165 1058.13