Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00067 ATGAAACACTTGAGAAGGTGGAAAACATCATCAGATGCTAATTCTTCCAAAACCAATAGCCTTAGGAAATGGCTTGTGATGAAGCTGAAAATGGAGGGATATGATTCTTCTCATCTTTCTCATACCTCTTGGGTCACTTCCATGGGCTGCCCAGCAGGGGATTATGAATACATAGAGATGAGAATGAAGGGTGAGAGACTGATAATAGACATAGAATTCAAAGCTCAGTTTGAAGTAGCAAGAGCAACAGAAGAATACAAACAGCTCACAAAAGCACTTCCATCTGTGTTTGTAGGAAGTGAAGAGAAAGTTAAGAGAATAATAAGTGTTTTATGTTCAGCAGCTAAGCAATCCCTGAAGAAGAGTGGTCTTCACATTCCCCCTTGGAGAACTTCCACTTATATGCATGCCAAATGGCTTCTTCTTCACCTTCATCATCACTCTAATCATCATATTAATTATATCCCTACTAATGATATCAATATTAATATTAACATTAGTACACCAAATAGTAATAATAATAATAATCATAACAATAAATTCTACTATTGGAAGCCTCCAATGGTGAATTAA 573 36.13 MKHLRRWKTSSDANSSKTNSLRKWLVMKLKMEGYDSSHLSHTSWVTSMGCPAGDYEYIEMRMKGERLIIDIEFKAQFEVARATEEYKQLTKALPSVFVGSEEKVKRIISVLCSAAKQSLKKSGLHIPPWRTSTYMHAKWLLLHLHHHSNHHINYIPTNDINININISTPNSNNNNNHNNKFYYWKPPMVN 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 560167 562175 - MELO3C023255.2.1 Cme11g00067 340730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00067 190 TIGRFAM A_thal_3542: uncharacterized plant-specific domain TIGR01615 23 141 IPR006502 -
Cme11g00067 190 Pfam PDDEXK-like family of unknown function 12 140 IPR006502 -
Cme11g00067 190 PANTHER T14N5.3 PROTEIN 2 168 - -
Cme11g00067 190 PANTHER OS03G0796600 PROTEIN 2 168 IPR006502 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00067 - - - csv:101214990 281.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00067 Cme-Chr11:560167 Cme12g00868 Cme-Chr12:15488335 1.39E-31 dispersed
Cme11g00067 Cme-Chr11:560167 Cme05g00511 Cme-Chr5:4668951 6.78E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1275 . . . . . . . . Cmo02g00628 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe05g01064 . Bhi10g01662 Tan07g0871 Cmetu11g0434 . Hepe08g1250 . . . . . . . . . Lsi10g00715 . . Cme11g00067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013620 0 1 0 0 0 1 1 1 1 0 0 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 2 0 1 2 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00067 Cme_Chr11 FPKM 8.611548 14.042584 10.768445 12.21832 4.173352 3.569956 5.698947 0.0 0.0 0.352206