Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00070 ATGGTCAAGCCCCACAATCTCTTCTTGACTATTCCCACTCATTTCATTTGCCCAATTTCTCTTGACCTCATGCAATCTCCCGTCAGTTTGATCACCGGCGTCACCTACGACCGTTCCAGTATTCAACGCTGGCTCGACTCTGGCCACAACACTTGTCCGGCCACCATGCAGGTCCTTCCCAACTACGGCTTCGTTCCCAATTCTAATCTCAAGCGTCTCATTCAGATTTGGTCCGACTCCCTCGAATTCGATCATATTCTTACTGTTGTCGACGGTTTGCGCACGAACGGAAATGCCTCTGTTTTTCTCTCGGAGCTTCTCTGTTTTGGTTCACGATTGGAAAAGAACGTTAAGTTTCTCGGGAGGATTCATGGCTTTGTACCGGTGCTTCTCGATGTTCTTCGTTGTAGAGATGTTGATTGTTCGGAACTTGTTGTTAGGGTTTTGGATTTGGTGAGATGTGAAATTGAGGATCGGGTGGAGTTTATGAACTTGATGTTGAAAAGCGATCGAGATTGTTTGAAATCTCTCGTTCTTGTTCTTCAACGAGGAAGTTCAGAGTCGCGAATTGGGACGGTGAGGCTTCTTGAATGCATCGCCATTAACGCCGAATCCAAGAATCTAATTGCTGAAAACGAAGGAATTCTACACGAATTGATTTAA 663 45.55 MVKPHNLFLTIPTHFICPISLDLMQSPVSLITGVTYDRSSIQRWLDSGHNTCPATMQVLPNYGFVPNSNLKRLIQIWSDSLEFDHILTVVDGLRTNGNASVFLSELLCFGSRLEKNVKFLGRIHGFVPVLLDVLRCRDVDCSELVVRVLDLVRCEIEDRVEFMNLMLKSDRDCLKSLVLVLQRGSSESRIGTVRLLECIAINAESKNLIAENEGILHELI 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 576543 578232 + MELO3C023258.2.1 Cme11g00070 340733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00070 220 SUPERFAMILY RING/U-box 8 79 - -
Cme11g00070 220 CDD RING-Ubox_PUB 15 57 IPR045210 -
Cme11g00070 220 ProSiteProfiles U-box domain profile. 10 84 IPR003613 GO:0004842|GO:0016567
Cme11g00070 220 SMART Ubox_2 14 77 IPR003613 GO:0004842|GO:0016567
Cme11g00070 220 Pfam U-box domain 11 78 IPR003613 GO:0004842|GO:0016567
Cme11g00070 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 83 IPR013083 -
Cme11g00070 220 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 5 220 - -
Cme11g00070 220 PANTHER WDSAM1 PROTEIN 5 220 IPR045185 GO:0061630
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g01071 Cme11g00070 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01071 Cme-Chr8:7018231 Cme11g00070 Cme-Chr11:576543 9.85E-65 dispersed
Cme11g00070 Cme-Chr11:576543 Cme07g00440 Cme-Chr7:2979812 3.60E-23 dispersed
Cme11g00070 Cme-Chr11:576543 Cme06g00308 Cme-Chr6:1875354 3.15E-22 transposed
Cme11g00070 Cme-Chr11:576543 Cme11g02480 Cme-Chr11:31437326 1.20E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00070 - - csv:101221867 423.705