Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00078 ATGCTGGAAATTTCCCCTTCACCGGAAAACTCTTCCGCCGCCGCCGCCACCGCCGCCGCCAACCGGGTCTCCAAGGAAGACGCTGCGGCGGCTTCTGCCGGAGTTTTAGAGGAAGCTGACCGGAACTGGCCCGGTAATCGGTGGCCACGAGAGGAGACTATGGCTTTGCTGAAGGTTCGGTCCAGTATGGACACTGCGTTTAGGGATGCAAGCTTGAAAGCTCCTCTATGGGAAGAAGTTTCCAGATTTCTGAATCGTATCAATGGAGTTTTGAAACTTAATCTTATGTTTGTTAGGAAATTGGGTGAGCTTGGATATAATCGAAATGCGAAGAAATGCAAAGAGAAGTTTGAGAACATTTATAAGTATCACAAAAGGACTAAAGATGGAAGATCAGGCAAATCGAATGGGAAAAATTATAGGTATTTTGAGCAATTAGAAGCTCTAGATAATCATCCGTTGCTTCCTTCTCAAGCTGATTCAATGGAAGAAATCCCAAAGATTATCCCGAACAATGTTGTTCACAATGCAATTCCTTGTTCCGTAGTAAACCCAGGTGCAAATTTTGTTGAAACTACCACCACTTCATTATCGACATCGACTACGTCTTGTTCGAGCAAAGAGTCAGGTGGGACGAGGAAGAAGAAGAGGAAGTTTGTGGAGTTCTTTGAGAGGTTAATGAATGAAGTGATTGAGAAGCAGGAGAAATTGCAAAAGAAGTTTGTGGAGGCATTGGAGAAATGTGAAGTAGAGAGGTTAGCGAGAGAAGAAGAGTGGAAGATGCAAGAATTAGCTCGAATCAAGAAAGAGCGAGAGCGTTTAAATCAAGAGAGATCGATTGCGGCTGCAAAGGACGCAGCCGTTCTTTCATTCTTGAAGGTTATCTCTGAACAAGGGGGTACAGTGCAGTTTCCTGAGAACTTGCTTTTGATGGAGAATTTGACTGAGAAGCAAGATGATGCTAATGGTGAAAGAAATACAAGCACTCAAGAGAATATCAACAATGGTAATTCAAATCAGATTAGTTCATCTCGATGGCCGAAAGAAGAGATCGATGCTCTGATTCAGCTTAGGACTAATCTACAGATGAAGTACCAAGATAGTGGCCCTAAAGGTCCTCTCTGGGAAGAAATATCACTAGCCATGAAGAAACTTGGTTATGATAGAAATGCAAAGAGGTGTAAAGAGAAATGGGAGAACATCAACAAATACTTCAAAAGAGTAAAGGAAAGCAACAAAAAGCGACCCGAGGATTCAAAGACATGCCCTTATTTCCAGCAACTCGATGCATTGTACAAACAGAAGTCCAAGAAAGTCATCAACAATCCAGCCAATCCAAATTACGAACTAAAACCCGAGGAACTATTGATGCACATGATGGGCAGCCAAGAAGAAACCCACCAACCTGAATCAGCAACAGATGATGGCGAAGCTGAGAATGCAGATAATCAAAACCAAGAAGACGAAGGCGAAGAAGGAGAAGACGAAGATGAGGACTATCGGATTGTAGCCAACAGCAACAACAACAACAATACTCAAATGCAAGTCAACTAG 1554 42.99 MLEISPSPENSSAAAATAAANRVSKEDAAAASAGVLEEADRNWPGNRWPREETMALLKVRSSMDTAFRDASLKAPLWEEVSRFLNRINGVLKLNLMFVRKLGELGYNRNAKKCKEKFENIYKYHKRTKDGRSGKSNGKNYRYFEQLEALDNHPLLPSQADSMEEIPKIIPNNVVHNAIPCSVVNPGANFVETTTTSLSTSTTSCSSKESGGTRKKKRKFVEFFERLMNEVIEKQEKLQKKFVEALEKCEVERLAREEEWKMQELARIKKERERLNQERSIAAAKDAAVLSFLKVISEQGGTVQFPENLLLMENLTEKQDDANGERNTSTQENINNGNSNQISSSRWPKEEIDALIQLRTNLQMKYQDSGPKGPLWEEISLAMKKLGYDRNAKRCKEKWENINKYFKRVKESNKKRPEDSKTCPYFQQLDALYKQKSKKVINNPANPNYELKPEELLMHMMGSQEETHQPESATDDGEAENADNQNQEDEGEEGEDEDEDYRIVANSNNNNNTQMQVN 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 629359 631382 + MELO3C023266.2.1 Cme11g00078 340741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00078 517 MobiDBLite consensus disorder prediction 503 517 - -
Cme11g00078 517 MobiDBLite consensus disorder prediction 1 20 - -
Cme11g00078 517 Coils Coil 257 284 - -
Cme11g00078 517 Gene3D - 48 126 - -
Cme11g00078 517 Gene3D - 346 407 - -
Cme11g00078 517 Coils Coil 311 331 - -
Cme11g00078 517 MobiDBLite consensus disorder prediction 475 499 - -
Cme11g00078 517 ProSiteProfiles Myb-like domain profile. 46 121 IPR001005 -
Cme11g00078 517 SMART sant 44 123 IPR001005 -
Cme11g00078 517 SMART sant 342 404 IPR001005 -
Cme11g00078 517 CDD GT1 344 409 - -
Cme11g00078 517 MobiDBLite consensus disorder prediction 1 18 - -
Cme11g00078 517 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 99 510 - -
Cme11g00078 517 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 86 - -
Cme11g00078 517 Pfam Myb/SANT-like DNA-binding domain 344 431 IPR044822 -
Cme11g00078 517 Pfam Myb/SANT-like DNA-binding domain 46 149 IPR044822 -
Cme11g00078 517 CDD GT1 46 128 - -
Cme11g00078 517 MobiDBLite consensus disorder prediction 319 344 - -
Cme11g00078 517 MobiDBLite consensus disorder prediction 325 344 - -
Cme11g00078 517 MobiDBLite consensus disorder prediction 462 517 - -
Cme11g00078 517 ProSiteProfiles Myb-like domain profile. 338 402 IPR001005 -
Cme11g00078 517 Coils Coil 220 247 - -
Cme11g00078 517 PANTHER - 1 86 - -
Cme11g00078 517 PANTHER - 99 510 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00078 - - - cmo:103499654 869.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00621 Cme-Chr3:10194329 Cme11g00078 Cme-Chr11:629359 1.44E-124 dispersed
Cme09g01908 Cme-Chr9:23225738 Cme11g00078 Cme-Chr11:629359 9.20E-10 dispersed
Cme09g01909 Cme-Chr9:23228374 Cme11g00078 Cme-Chr11:629359 1.50E-06 dispersed
Cme10g00135 Cme-Chr10:981355 Cme11g00078 Cme-Chr11:629359 1.86E-19 dispersed
Cme11g00078 Cme-Chr11:629359 Cme12g00753 Cme-Chr12:13742646 7.40E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42124 PF13837 Myb_DNA-bind_4 3.00E-13 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00078 Cme_Chr11 FPKM 5.543492 6.20894 4.76948 4.077008 2.371479 3.156193 2.722418 0.0 0.197924 0.068254