Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00083 ATGGAGAAATCACCAGGAAATGAACTTACACACAAGGCTTTTGGTTGGGCTGCTCGAGATTCATCTGGGGAAAATGGTGATGATGATGTCTCTATCAAAGTTCTCTACTGTGGGGTTTGCCACTCTGATTTGCATATGCTCAAGAATGACTGGGGTTCCACAGATTATCCTATAGTACCTGGGCATGAGATTGTTGGTGTTGTGACTTCTGTTGGAAAAAATGTGAAGAGATTCAAAGCAGGAGACGAAGTCGGTGTCGGTGTCATAGTTGGATCTTGTAGAAATTGTGAAAATTGTAAACAAGACTTGGAGAGTTACTGTCCCAAGATGGAATATACTTACAATTCTCCTGGAGTTGATGGAACGAAGAATTACGGTGGTTATTCCGATAAGATCGTTGTCGATCAACATTTTGTTGTTAGATTTCCTAAAAACTTAGCTCTTGATGCTGGGGCTCCACTCCTATGTGCTGGGATAACAGTCTATAGCCCAATGAAACATTTTGGAATGACTGAACCTGGTAAGCATTTGGGTGTGGCTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGTAAGGCTTTTGGATTGAAAGTTACTGTCATTAGTACCTCTTCTAGGAAGAAGGAAGAAGCAATTGACAGGCTCGGTGCTGACGCTTTCGTTGTTTCGACTGATCCCGAACAATTGAAGGCTGCCATGGGAACTATGGATTACATTTTGGACACAATATCAGCTGTTCATCCTCTTGATCCGTTGATTAGTCTGCTAAACCTCAATGGAAAACTCGTTGCTGTCGGCTTACCTAACAAGCCAGTTGAACTATCGATCGGGATTCTTGCTTCTGGTAGGAGGGTGGTAGCCGGAAGCAACTTTGGAGGACTGAAAGAGACACAAGAAATGTTAGATTTCTGTGGAAAACACAATATTACAGCAGAAATTGAGCTCATTAAGATGGATGACATTAACTCAGCCATGGAAAGGCTTGCGAAAGCTGATGTTAAATATCGGTTTGTGATCGACATCGAAAACTCTTTCAAATAG 1047 42.31 MEKSPGNELTHKAFGWAARDSSGENGDDDVSIKVLYCGVCHSDLHMLKNDWGSTDYPIVPGHEIVGVVTSVGKNVKRFKAGDEVGVGVIVGSCRNCENCKQDLESYCPKMEYTYNSPGVDGTKNYGGYSDKIVVDQHFVVRFPKNLALDAGAPLLCAGITVYSPMKHFGMTEPGKHLGVAGLGGLGHVAVKFGKAFGLKVTVISTSSRKKEEAIDRLGADAFVVSTDPEQLKAAMGTMDYILDTISAVHPLDPLISLLNLNGKLVAVGLPNKPVELSIGILASGRRVVAGSNFGGLKETQEMLDFCGKHNITAEIELIKMDDINSAMERLAKADVKYRFVIDIENSFK 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 693602 695918 + MELO3C034560.2.1 Cme11g00083 340746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00083 348 Pfam Zinc-binding dehydrogenase 184 305 IPR013149 -
Cme11g00083 348 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 61 75 IPR002328 GO:0008270|GO:0016491
Cme11g00083 348 PANTHER ALDEHYDE REDUCTASE 7 346 - -
Cme11g00083 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 148 311 IPR036291 -
Cme11g00083 348 Gene3D - 24 343 - -
Cme11g00083 348 SMART PKS_ER_names_mod 9 341 IPR020843 GO:0016491
Cme11g00083 348 SUPERFAMILY GroES-like 24 175 IPR011032 -
Cme11g00083 348 Gene3D - 157 313 - -
Cme11g00083 348 CDD CAD1 14 342 - -
Cme11g00083 348 Pfam Alcohol dehydrogenase GroES-like domain 28 141 IPR013154 -
Cme11g00083 348 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 8 7 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01378 Cme-Chr6:12016238 Cme11g00083 Cme-Chr11:693602 7.44E-115 dispersed
Cme11g00083 Cme-Chr11:693602 Cme09g01886 Cme-Chr9:23008379 4.08E-16 dispersed
Cme11g00083 Cme-Chr11:693602 Cme11g00085 Cme-Chr11:721295 2.88E-176 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00083 K00083 - csv:101205228 666.381