Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00085 ATGGCAAAATCACCAGAAAACGAACATCCAATCAAGACTCTGGGATGGGGTGCTCGAGATTCATCTGGGTTAATCTCTCCTTTCCCTTTATCTCGAAGGGAAAATGGTGATGAAGATGTCAGTATCAAAATCCTTTACTGTGGTGTTTGCCATTCTGATCTACATACAGCCAAGAATGAATGGGGTAACACAAATTATCCAGTTGTCCCAGGGCATGAGATTGTTGGTGTTGTGACCTCTGTTGGGAATAATGTGAAGAAATTCAAAGCAGGCGACCAAGTCGGTGTCGGTGTGATAGTTGAATGTTGCAAAAGTTGTGAAAATTGTGAAGAGGACAGGGAGAATTACTGCCCCAAATTGGTATATACTTACAATGCACATTTACATGATGGATCGAAGACATATGGGGGATATTCTGATAAGATTGTCGTCGATCAGCATTGCGTGTTTCGAATTCCCGACAGTTTACCCCTGGCTGGTGCAGCTCCACTTCTATGTGCTGGAATCACAGTTTATAGCCCCATGAAATACTATGGAATGACTGAATCTGGTAAGCATTTGGGTGTGGTTGGTCTTGGTGGGCTTGGTCATGTTGCTGTTAAGATTGCTAAGGCATTTGGGTTGAAAGTTACTGTCATAAGTACTTCTCCAAGAAAGAAGGAGGAATCTATTAGCAAGCTTGGTGCCGATTCTTTCCTTGTTTCAACTGATCCTGAACAAATGAAGGCTGCAACAGAGACAATGGATTACATTATAGACACGGTATCTGCTGTCCATGCTCTCGATCCATTGCTTAGTCTTCTAAAGCTGAATGGAAAGTTGATCACTGTGGGTTTACCTGACAAGCCCCTAGAGCTGCCAATTTCTTCTCTAGTTAACGTTAGGAGGATGGTTGGTGGAAGCAACTTTGGAGGGATGAAAGAGACACAAGAGATGTTGGATTTCTGTGCCGAGCACAACATTGTAGCAGACATTGAGCTCATTAAGATGAATGACATAAACAATGCCATGGAAAGACTTGCCAAATCTGATGTTCGATACCGGTTCGTGATCGACATTGCAAACTCCTTGAAATAA 1077 42.71 MAKSPENEHPIKTLGWGARDSSGLISPFPLSRRENGDEDVSIKILYCGVCHSDLHTAKNEWGNTNYPVVPGHEIVGVVTSVGNNVKKFKAGDQVGVGVIVECCKSCENCEEDRENYCPKLVYTYNAHLHDGSKTYGGYSDKIVVDQHCVFRIPDSLPLAGAAPLLCAGITVYSPMKYYGMTESGKHLGVVGLGGLGHVAVKIAKAFGLKVTVISTSPRKKEESISKLGADSFLVSTDPEQMKAATETMDYIIDTVSAVHALDPLLSLLKLNGKLITVGLPDKPLELPISSLVNVRRMVGGSNFGGMKETQEMLDFCAEHNIVADIELIKMNDINNAMERLAKSDVRYRFVIDIANSLK 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 721295 724529 + MELO3C023272.2.1 Cme11g00085 340748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00085 358 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Cme11g00085 358 SUPERFAMILY GroES-like 25 185 IPR011032 -
Cme11g00085 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Cme11g00085 358 Gene3D - 167 323 - -
Cme11g00085 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Cme11g00085 358 Gene3D - 16 353 - -
Cme11g00085 358 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 12 357 - -
Cme11g00085 358 PANTHER ALDEHYDE REDUCTASE 12 357 - -
Cme11g00085 358 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Cme11g00085 358 SMART PKS_ER_names_mod 17 351 IPR020843 GO:0016491
Cme11g00085 358 CDD CAD1 15 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00714 Cme-Chr8:4754121 Cme11g00085 Cme-Chr11:721295 1.27E-164 dispersed
Cme09g01902 Cme-Chr9:23162589 Cme11g00085 Cme-Chr11:721295 8.23E-114 dispersed
Cme11g00085 Cme-Chr11:721295 Cme09g01886 Cme-Chr9:23008379 7.86E-20 dispersed
Cme11g00083 Cme-Chr11:693602 Cme11g00085 Cme-Chr11:721295 2.88E-176 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00085 K00083 - csv:101206562 630.943